DRSC/TRiP Functional Genomics Resources

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Protein Alignment kni and nhr-211

DIOPT Version :9

Sequence 1:NP_001287130.1 Gene:kni / 40287 FlyBaseID:FBgn0001320 Length:434 Species:Drosophila melanogaster
Sequence 2:NP_503218.1 Gene:nhr-211 / 187963 WormBaseID:WBGene00020152 Length:383 Species:Caenorhabditis elegans


Alignment Length:179 Identity:53/179 - (29%)
Similarity:68/179 - (37%) Gaps:47/179 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 MNQTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNISTISECKNEGKCIIDKKNRTTCKACRLRK 70
            |::.|.:|..||.|.||||.||..|.:||.|:.........||:..||.....|...||:||:||
 Worm     1 MSKKCGICDAPAHGRHFGALTCLSCAAFFRRAIFAKKKRKSCKSGNKCRDFNGNFPQCKSCRMRK 65

  Fly    71 CYNVGMSKGGSRYGRRSNWFKIHCLLQEHEQAAAAAGKAPPLAG-----GVSVGGAPS----ASS 126
            |..|||.                           ...|:||.|.     .|.| ..||    |:.
 Worm    66 CLRVGMK---------------------------LESKSPPPAAIPQSLEVFV-SRPSMILFANK 102

  Fly   127 PVGSPHTPGFGDMA-------AHLHHHHQQQQQQQVPRHPHMPLLGYPS 168
            |   ..|..|.|::       :.|.|..|....|::.....|.|.|.||
 Worm   103 P---SQTRNFIDVSNLVARGLSILKHGAQSPLNQKLTSLEKMALAGSPS 148

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kniNP_001287130.1 NR_DBD_like 8..92 CDD:295381 30/83 (36%)
nhr-211NP_503218.1 ZnF_C4 4..74 CDD:197701 30/96 (31%)
Hormone_recep 150..358 CDD:278530
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1136195at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.010

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