DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment kni and nhr-203

DIOPT Version :9

Sequence 1:NP_001287130.1 Gene:kni / 40287 FlyBaseID:FBgn0001320 Length:434 Species:Drosophila melanogaster
Sequence 2:NP_503209.2 Gene:nhr-203 / 187410 WormBaseID:WBGene00019743 Length:409 Species:Caenorhabditis elegans


Alignment Length:81 Identity:30/81 - (37%)
Similarity:45/81 - (55%) Gaps:2/81 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 MNQTCKVCGEPAA-GFHFGAFTCEGCKSFFGRSYNNISTISECKNEGKCIIDKKNRTTCKACRLR 69
            :::.|.||.:..| |.|||||||..|.:|| |.:.....:..||....|...|...|:||.|||:
 Worm    18 VSEKCPVCWKHTAHGMHFGAFTCRACAAFF-RRFATTKNLKPCKKSNVCEFTKNGYTSCKKCRLQ 81

  Fly    70 KCYNVGMSKGGSRYGR 85
            :|:::||.....::.|
 Worm    82 RCFDIGMKIDNFQFER 97

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kniNP_001287130.1 NR_DBD_like 8..92 CDD:295381 30/79 (38%)
nhr-203NP_503209.2 ZnF_C4 21..91 CDD:197701 29/70 (41%)
Hormone_recep 182..381 CDD:278530
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D473314at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.010

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