DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment kni and Pgr

DIOPT Version :10

Sequence 1:NP_001287130.1 Gene:kni / 40287 FlyBaseID:FBgn0001320 Length:434 Species:Drosophila melanogaster
Sequence 2:NP_032855.2 Gene:Pgr / 18667 MGIID:97567 Length:926 Species:Mus musculus


Alignment Length:191 Identity:54/191 - (28%)
Similarity:81/191 - (42%) Gaps:54/191 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 NLMNQTCKVCGEPAAGFHFGAFTCEGCKSFFGRS----YNNISTISECKNEGKCIIDKKNRTTCK 64
            :|..:.|.:||:.|:|.|:|..||..||.||.|:    :|.:     |.....||:||..|..|.
Mouse   554 SLPQKICLICGDEASGCHYGVLTCGSCKVFFKRAMEGQHNYL-----CAGRNDCIVDKIRRKNCP 613

  Fly    65 ACRLRKCYNVGMSKGGSRYGRRSNWFKIHCLLQEHEQAAAAAGKAPPLAGGVSVGGAPSASSPVG 129
            |||||||...||..||.:: ::.|..::...|.         |.|.|.:.|:     |:.|..:|
Mouse   614 ACRLRKCCQAGMVLGGRKF-KKFNKVRVMRTLD---------GVALPQSVGL-----PNESQALG 663

  Fly   130 -----SPHTPGFGDMAAHLHHHHQQQQQQQVPR--------HPHMPLLGYPSYLSDPSAAL 177
                 ||:                 |:.|.||.        .|.:...|:.:...|.|::|
Mouse   664 QRITFSPN-----------------QEIQLVPPLINLLMSIEPDVVYAGHDNTKPDTSSSL 707

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kniNP_001287130.1 NR_DBD_like 8..92 CDD:413390 34/87 (39%)
PgrNP_032855.2 Modulating, Pro-Rich 1..559 1/4 (25%)
Prog_receptor 1..557 CDD:460470 1/2 (50%)
AF3, mediates transcriptional activation (in isoform B). /evidence=ECO:0000250|UniProtKB:P06401 1..165
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..48
LXXL motif 1. /evidence=ECO:0000250|UniProtKB:P06401 56..60
LXXL motif 1. /evidence=ECO:0000250|UniProtKB:P06401 116..120
Mediates transcriptional transrepression (in isoform A). /evidence=ECO:0000250|UniProtKB:P06401 166..305
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 168..256
Nuclear localization signal. /evidence=ECO:0000255 184..188
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 327..364
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 391..447
AF1, mediates transcriptional activation. /evidence=ECO:0000250|UniProtKB:P06401 453..539
NR_DBD_GR_PR 556..633 CDD:143546 33/82 (40%)
AF2, mediates transcriptional activation. /evidence=ECO:0000250|UniProtKB:P06401 673..926 8/35 (23%)
NR_LBD_PR 679..926 CDD:132759 5/29 (17%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.