DRSC/TRiP Functional Genomics Resources

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Protein Alignment kni and nhr-95

DIOPT Version :9

Sequence 1:NP_001287130.1 Gene:kni / 40287 FlyBaseID:FBgn0001320 Length:434 Species:Drosophila melanogaster
Sequence 2:NP_001024229.1 Gene:nhr-95 / 180254 WormBaseID:WBGene00003685 Length:509 Species:Caenorhabditis elegans


Alignment Length:220 Identity:48/220 - (21%)
Similarity:84/220 - (38%) Gaps:55/220 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 VFNLMNQTCKVCG-EPAAGFHFGAFTCEGCKSFFGRSYNNISTISECKNEGKCIIDKKNRTT--C 63
            :.:::.|.|::|. :...|.|||..:|..|.:||.|:.|:..:...|.. |.|     |:.:  |
 Worm     6 ISHILPQKCEICKIQKCHGNHFGVNSCRACAAFFRRTVNSKWSRMRCLG-GSC-----NQISFLC 64

  Fly    64 KACRLRKCYNVGMSKGGSRYGRRSNWFKIHCLLQEHEQAAAAAGKAPPLAGGVSVGGAPSASSP- 127
            |.|||::|:|.||.....:|.|     .:.|.:...                      |:.|.| 
 Worm    65 KPCRLQQCFNGGMMTNNFQYNR-----DVICPMDPQ----------------------PTVSIPK 102

  Fly   128 -----VGSPHTPGFGDMAAHLHHHHQQQQQQQVPRHPHMPLLGYPSYLSDPSAALPFFSMMGGVP 187
                 :|.|:.....:         :..::.::..|   .|||..|.:....:|.|.| ..|...
 Worm   103 SLEIYLGKPYFVMLSE---------KNSEKTEIDLH---RLLGEASKILSQGSASPSF-CAGNQL 154

  Fly   188 HQSPFQLPPHLLFPGYHASAAAAAA 212
            .:....||..::.|.:..:...|.|
 Worm   155 KKLSLGLPNQIIAPRFKMAEKVAKA 179

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kniNP_001287130.1 NR_DBD_like 8..92 CDD:295381 28/86 (33%)
nhr-95NP_001024229.1 ZnF_C4 13..80 CDD:197701 25/72 (35%)
Hormone_recep 168..366 CDD:278530 3/12 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1136195at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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