DRSC/TRiP Functional Genomics Resources

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Protein Alignment kni and nhr-107

DIOPT Version :10

Sequence 1:NP_001287130.1 Gene:kni / 40287 FlyBaseID:FBgn0001320 Length:434 Species:Drosophila melanogaster
Sequence 2:NP_504770.2 Gene:nhr-107 / 179083 WormBaseID:WBGene00003697 Length:357 Species:Caenorhabditis elegans


Alignment Length:85 Identity:32/85 - (37%)
Similarity:45/85 - (52%) Gaps:7/85 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 CKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNISTISECKNEGKCIIDKKNRTTCKACRLRKCYNV 74
            |.||...:|.:||||..|..|.:||.|..|:......|    ||:..|:::..|:.||::||..|
 Worm     4 CMVCDASSAQYHFGAIACRACAAFFRRYVNSKKLTILC----KCLSKKESQYPCRLCRMKKCKAV 64

  Fly    75 GMSKGGSRYGRR--SNWFKI 92
            || :.....|.|  :|.|||
 Worm    65 GM-EASKVQGPRDVNNPFKI 83

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kniNP_001287130.1 NR_DBD_like 8..92 CDD:413390 30/83 (36%)
nhr-107NP_504770.2 ZnF_C4 3..66 CDD:197701 24/65 (37%)
NR_LBD 145..325 CDD:132726
Blue background indicates that the domain is not in the aligned region.

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