DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment kni and pgr

DIOPT Version :10

Sequence 1:NP_001287130.1 Gene:kni / 40287 FlyBaseID:FBgn0001320 Length:434 Species:Drosophila melanogaster
Sequence 2:XP_002935617.1 Gene:pgr / 100493487 XenbaseID:XB-GENE-484457 Length:731 Species:Xenopus tropicalis


Alignment Length:99 Identity:37/99 - (37%)
Similarity:51/99 - (51%) Gaps:12/99 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LMNQTCKVCGEPAAGFHFGAFTCEGCKSFFGRS----YNNISTISECKNEGKCIIDKKNRTTCKA 65
            |..:.|.:||:.|:|.|:|..||..||.||.|:    :|.:     |.....||:||..|..|.:
 Frog   359 LAQKVCLICGDEASGCHYGVLTCGSCKVFFKRAVEGQHNYL-----CAGRNDCIVDKIRRKNCPS 418

  Fly    66 CRLRKCYNVGMSKGG---SRYGRRSNWFKIHCLL 96
            ||||||...||..||   .::||.....:|..|:
 Frog   419 CRLRKCCQAGMVLGGRKFKKFGRIKTGREIDALV 452

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kniNP_001287130.1 NR_DBD_like 8..92 CDD:413390 34/90 (38%)
pgrXP_002935617.1 Prog_receptor <171..361 CDD:460470 1/1 (100%)
NR_DBD_GR_PR 361..437 CDD:143546 32/80 (40%)
NR_LBD_PR 484..731 CDD:132759
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.