DRSC/TRiP Functional Genomics Resources

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Protein Alignment knrl and Esrrb

DIOPT Version :10

Sequence 1:NP_788552.1 Gene:knrl / 40285 FlyBaseID:FBgn0001323 Length:647 Species:Drosophila melanogaster
Sequence 2:NP_001008516.3 Gene:Esrrb / 299210 RGDID:1359557 Length:510 Species:Rattus norvegicus


Alignment Length:86 Identity:38/86 - (44%)
Similarity:50/86 - (58%) Gaps:5/86 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 YAMN----QTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLSSISDCKNNGECIINKKNRTACK 68
            |.:|    :.|.|||:.|:|:|:|..:||.||:||.|:.......| |....||.|.|:.|.:|:
  Rat   170 YMLNAIPKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYS-CPATNECEITKRRRKSCQ 233

  Fly    69 ACRLKKCLMVGMSKSGSRYGR 89
            |||..|||.|||.|.|.|..|
  Rat   234 ACRFMKCLKVGMLKEGVRLDR 254

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
knrlNP_788552.1 NR_DBD_like 12..96 CDD:413390 36/78 (46%)
EsrrbNP_001008516.3 NR_DBD_ERR 175..270 CDD:143544 36/81 (44%)
NR_LBD_ERR 289..508 CDD:132744
Blue background indicates that the domain is not in the aligned region.

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