DRSC/TRiP Functional Genomics Resources

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Protein Alignment knrl and nhr-208

DIOPT Version :9

Sequence 1:NP_001303368.1 Gene:knrl / 40285 FlyBaseID:FBgn0001323 Length:647 Species:Drosophila melanogaster
Sequence 2:NP_506034.2 Gene:nhr-208 / 187662 WormBaseID:WBGene00011099 Length:410 Species:Caenorhabditis elegans


Alignment Length:81 Identity:31/81 - (38%)
Similarity:44/81 - (54%) Gaps:3/81 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 CKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLSSISDCKNNGECIINK--KNRTACKACRLKKCL 76
            |::||.||.|:|:...:|.|||:||.|:......:: ||..|.|:..:  .||..|..||..||:
 Worm    43 CEICGNPAIGYHYDIASCNGCKAFFRRTVITGRQVA-CKKWGTCLEEEIPINRRICPGCRFSKCV 106

  Fly    77 MVGMSKSGSRYGRRSN 92
            .|||:....|....||
 Worm   107 KVGMNPRAIRAEISSN 122

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
knrlNP_001303368.1 NR_DBD_like 12..96 CDD:295381 31/81 (38%)
nhr-208NP_506034.2 ZnF_C4 42..112 CDD:197701 28/69 (41%)
HOLI 216..376 CDD:214658
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_2AR2M
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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