DRSC/TRiP Functional Genomics Resources

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Protein Alignment knrl and nhr-96

DIOPT Version :9

Sequence 1:NP_001303368.1 Gene:knrl / 40285 FlyBaseID:FBgn0001323 Length:647 Species:Drosophila melanogaster
Sequence 2:NP_503611.3 Gene:nhr-96 / 178703 WormBaseID:WBGene00003686 Length:402 Species:Caenorhabditis elegans


Alignment Length:86 Identity:29/86 - (33%)
Similarity:40/86 - (46%) Gaps:5/86 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 CKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLSSISDCKNNGECIINKKNRTACKACRLKKCLMV 78
            |.|||:...|.:||..:|..|.:||.|:........:|. ...|.|.:..:..||.||||:|..|
 Worm     7 CAVCGQVTTGKNFGVISCRSCAAFFRRAPTWSRRFPECV-KASCAIFENGKFKCKKCRLKRCQEV 70

  Fly    79 GMSKSGSRYGR----RSNWFK 95
            ||.....:..|    .||.|:
 Worm    71 GMDVKKIQQNRDLISTSNMFQ 91

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
knrlNP_001303368.1 NR_DBD_like 12..96 CDD:295381 29/86 (34%)
nhr-96NP_503611.3 NR_DBD_HNF4A 7..82 CDD:143518 25/75 (33%)
Hormone_recep 175..379 CDD:278530
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1136195at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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