DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rcd2 and vwf

DIOPT Version :10

Sequence 1:NP_649244.3 Gene:Rcd2 / 40283 FlyBaseID:FBgn0037012 Length:452 Species:Drosophila melanogaster
Sequence 2:NP_001268918.1 Gene:vwf / 570643 ZFINID:ZDB-GENE-070103-1 Length:2812 Species:Danio rerio


Alignment Length:634 Identity:109/634 - (17%)
Similarity:182/634 - (28%) Gaps:233/634 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 KLITICLLLRILQSCAM----PIIDPD-----SIDESLACPPCENDFPICYKVIVEVER--GNGL 56
            ||:|:....|:|.|...    .::||:     ...::.:||...:....|..:......  ..||
Zfish  1038 KLVTVEQSCRVLTSAIFRDCNSVVDPEPYWDICTQDTCSCPSVGDCACFCNTIAAYAHECAQKGL 1102

  Fly    57 P-----GSCCP-RYECLDEEPVCDGSKRRFYKNKC-----TVCDPCEPLA--IQCKE----ICP- 103
            |     ...|| ..|.|::|   .|.:..:..|.|     :.|...|||:  |.|.|    :|| 
Zfish  1103 PVNWRSNDLCPLSCEDLNKE---SGVQCEWRYNTCASACPSTCQHPEPLSCPISCVEGCHAVCPP 1164

  Fly   104 ---MEE-----PEP----ICLSDNNEYHRNGDIWMENNG---CTTCMCEGGYVTRNAVQCNHYYR 153
               ::|     .||    :|:.|...........:.:..   |..|.||.     |.:.|     
Zfish  1165 GHLLDEVLRKCVEPSQCQVCVHDGQRVSHGKQFILNHEDPRLCQICHCES-----NTLTC----- 1219

  Fly   154 CNNPVEVKGQCCPVCPDELGVSNSIYDDGNHKYRNTTSAPILGESESSSSGWSSTVPTDTSDSVP 218
              .|..|.|....:.|                   ||..|       :...:|:.||.|..|...
Zfish  1220 --GPCPVTGLTSTLAP-------------------TTVTP-------TPLPFSTPVPADACDRAM 1256

  Fly   219 DTSGSPNSSSTSSE--------------------------------------------------- 232
            |.:...:.||..||                                                   
Zfish  1257 DLAFLVDGSSALSEDDFSMIKLFILRVVERFRMGSAHTRATVLLFHSGVKSYDMQVQKWIFKKMV 1321

  Fly   233 ------------------------------------------LATPTPNTS--------ELSSST 247
                                                      .|.|.|..|        :::..|
Zfish  1322 REMRYTGGDVAFMDEAIKYLAVYIYDKNKREHAGRVAILLTASANPRPMRSTQRLLRKKDITILT 1386

  Fly   248 ERTSTDSSYEQLGEFATSESPDLR-------TDSEEQETSSSDSAMETTTNPTTFEATATSTVSS 305
            .....|.:..|:.|. |..:|..|       |:.:::..|.:|.......:|...:...|:..|:
Zfish  1387 VALGPDVNMAQVNEI-TKATPSSRAYVVSSVTELDDEALSITDYLCTLGLDPEPQKKPPTAKPST 1450

  Fly   306 TSMELPTATDDGITKMDFNPDGR---------TPKATDEPTVIL----------VNAT------- 344
            ||:   |.|.:.|||:...|...         ||..|..||.:.          .|||       
Zfish  1451 TSV---TPTTNAITKLTIPPTAAIVTAFPSIPTPGTTLVPTTVTTYDLVFLLENANATGEDGFNK 1512

  Fly   345 ------NFLSVVTDNPITNQPAVVAPESTSQIKDLNSMEIQQIRYPYAEVPQERIQTDWPLECVV 403
                  |.::.:......|....|...|.:...:::.||:    :...:|.|...|..|.....|
Zfish  1513 TRDSLINIITSLDQKEAENLRITVMMYSVTVTVEISRMEL----HHREQVVQRMRQLRWTEGAEV 1573

  Fly   404 IMGFVILIVFISLYAIVKRYSKNKKYHAIPLNPVRKLNETEKAKTEQKL 452
            ..|..:..|:.::.......:.::....|..:|...:.:...:.|.:|:
Zfish  1574 NTGHAVQSVYETITTDTHSDTPDQLVFLITQSPPTDVIQRPPSSTHKKI 1622

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rcd2NP_649244.3 VWC 114..168 CDD:214564 10/56 (18%)
vwfNP_001268918.1 VWD 29..167 CDD:459671
C8 218..284 CDD:462584
TIL 288..341 CDD:410995
VWC 343..>387 CDD:450195
VWD 381..530 CDD:459671
C8 572..641 CDD:214843
TIL 645..700 CDD:410995
TIL 760..818 CDD:410995
VWD 847..1003 CDD:214566
C8 1043..1113 CDD:214843 11/69 (16%)
TIL 1131..1181 CDD:410995 14/49 (29%)
VWA_N2 1183..>1228 CDD:465038 11/56 (20%)
VWA 1257..1421 CDD:459670 17/164 (10%)
vWFA_subfamily_ECM 1493..1628 CDD:238727 20/134 (15%)
VWA 1693..1848 CDD:459670
VWD 1939..2091 CDD:214566
C8 2131..2195 CDD:214843
CT 2731..2808 CDD:214482
Blue background indicates that the domain is not in the aligned region.

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