DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rcd2 and Vwf

DIOPT Version :10

Sequence 1:NP_649244.3 Gene:Rcd2 / 40283 FlyBaseID:FBgn0037012 Length:452 Species:Drosophila melanogaster
Sequence 2:NP_035838.3 Gene:Vwf / 22371 MGIID:98941 Length:2813 Species:Mus musculus


Alignment Length:329 Identity:73/329 - (22%)
Similarity:99/329 - (30%) Gaps:127/329 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 ITICLLLRILQSCAMPIIDPDSIDESLACPPCENDFPICYKVIVEVERGNGLPGSCCPRYEC--- 66
            |.:||..|.:...|.|.  |.:  .:..|.|||         :..:::...|   |||.|||   
Mouse  2280 ICMCLSGRKINCTAQPC--PTA--RAPTCGPCE---------VARLKQSTNL---CCPEYECVCD 2328

  Fly    67 -----LDEEPVCDGSKRRFYKN--KCTVCDPCEPLAIQCKEICPMEEPE---------------- 108
                 |...|.|:|..:....|  :|.....|.....:||.:.|...|.                
Mouse  2329 LFNCNLPPVPPCEGGLQPTLTNPGECRPTFTCACRKEECKRVSPPSCPPHRTPTLRKTQCCDEYE 2393

  Fly   109 ------------PI-----------------CLSDNNEYHRN-----GDIWMENNGCTTCMC--- 136
                        |:                 ||.|....||.     |..|.|  ||.||.|   
Mouse  2394 CACSCVNSTLSCPLGYLASATTNDCGCTTTTCLPDKVCVHRGTVYPVGQFWEE--GCDTCTCTDM 2456

  Fly   137 EGGYVTRNAVQCNHYYRCNNPVE-----------VKGQCCPVC-PDELGVSNSIYDDGNHKYRNT 189
            |...|....|||:     ..|.|           .:|:||..| |....|               
Mouse  2457 EDTVVGLRVVQCS-----QRPCEDSCQPGFSYVLHEGECCGRCLPSACKV--------------- 2501

  Fly   190 TSAPILGESESSSSGWSS-----TVP-----TDTSDSVPDTSGSPNSSSTSSELATPT-PNTSEL 243
            .:..:.|:|.||   |.|     .||     .:....|.|.......:.:..:||.|| |...:|
Mouse  2502 VAGSLRGDSHSS---WKSVGSRWAVPENPCLVNECVRVEDAVFVQQRNISCPQLAVPTCPTGFQL 2563

  Fly   244 SSST 247
            :..|
Mouse  2564 NCET 2567

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rcd2NP_649244.3 VWC 114..168 CDD:214564 21/72 (29%)
VwfNP_035838.3 VWD 35..179 CDD:459671
C8 218..292 CDD:214843
TIL 295..348 CDD:410995
VWC 350..>394 CDD:450195
VWD 388..541 CDD:459671
C8 579..649 CDD:214843
TIL 652..707 CDD:410995
Amino-terminal 764..787
E1 788..833
TIL <788..827 CDD:410995
CX 826..853
VWD 856..1011 CDD:214566
C8 1053..1127 CDD:214843
TIL 1146..1196 CDD:410995
VWA_N2 1198..1276 CDD:465038
VWA 1277..1449 CDD:214621
VWA 1498..1658 CDD:459670
VWA 1691..1863 CDD:459670
VWD 1950..2102 CDD:459671
C8 2138..2199 CDD:462584
TIL 2203..2254 CDD:410995
E2 2216..2261
VWC 2257..2321 CDD:214564 13/56 (23%)
VWC 2431..2494 CDD:214564 20/69 (29%)
Cell attachment site. /evidence=ECO:0000250 2507..2509 0/1 (0%)
VWC 2582..2644 CDD:450195
CT 2727..2808 CDD:214482
Blue background indicates that the domain is not in the aligned region.

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