DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rcd2 and Otog

DIOPT Version :10

Sequence 1:NP_649244.3 Gene:Rcd2 / 40283 FlyBaseID:FBgn0037012 Length:452 Species:Drosophila melanogaster
Sequence 2:XP_017177514.1 Gene:Otog / 18419 MGIID:1202064 Length:2917 Species:Mus musculus


Alignment Length:363 Identity:79/363 - (21%)
Similarity:130/363 - (35%) Gaps:111/363 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 EVERGNGLPGSCCPRYECLDEEPVCDGSKRRFYKNKCTVC-DPC-----EPLAIQCKEICPMEEP 107
            ||.||..|       :..||.:|:  |:.....:.:...| .||     :|.|..|:::..:|..
Mouse  1379 EVFRGGAL-------FRLLDAKPL--GAAYPTCEWRYDACASPCFQTCRDPRATSCQDVPRVEGC 1434

  Fly   108 EPICLSDN--NEYHRNGDIWMENNGCTTCMCEGGYVTRNAVQCNHYYRCNNPVEVKGQCCPVCPD 170
            .|:|.:..  :|..:. .:::|:  |......|...|           ..|...|.||..|    
Mouse  1435 VPVCPTPKVLDEVTQR-CVYLED--CVEPAPRGPTET-----------LGNETLVPGQVPP---- 1481

  Fly   171 ELGVSNSIYDDGNHKYRNTTSA-PILGESESSSSGWS-STVPTDTSDSVPDTSGSPNSSSTSSEL 233
                              |||| ..|.:....:|.:| :.||.     .|.|| :||....::|.
Mouse  1482 ------------------TTSAEQQLPQGLPGASAYSPAPVPV-----APPTS-APNPPMAATEG 1522

  Fly   234 ATPTPNTSELSSSTERTSTDSSYEQLGEFATSESPDLRTDSEEQETSSSDSAMETTTNPTTFEAT 298
            ..|:|.:::.:..|          .|| ..||..|...|::..:|..:  :::.||::|..|.::
Mouse  1523 QAPSPGSTQPTLQT----------PLG-LTTSNFPAGHTEATAREEGA--ASLLTTSHPPGFSSS 1574

  Fly   299 ATSTVSSTSMELPTATDDGITKMDFNPDGRTPKATDEPTVILVNATNFLSVVTDNPITNQP---- 359
            ..|     |:::||:   ||.      .|.|  .|.:.|:....:.|........||...|    
Mouse  1575 LPS-----SLQMPTS---GIV------SGAT--ETTKVTITFTGSPNTTVASRSPPIPRFPLMTK 1623

  Fly   360 AVVAPESTSQIKDLNSMEIQQIRYPYAEVPQERIQTDW 397
            ||..|...|              :|....|   :|..|
Mouse  1624 AVTVPSHDS--------------FPVKTTP---LQPSW 1644

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rcd2NP_649244.3 VWC 114..168 CDD:214564 10/55 (18%)
OtogXP_017177514.1 VWD 145..295 CDD:459671
C8 342..405 CDD:462584
TIL 419..467 CDD:410995
VWC 469..>504 CDD:450195
VWD 507..662 CDD:459671
C8 706..760 CDD:462584
TIL 773..837 CDD:460351
TIL 877..939 CDD:410995
VWD 970..1124 CDD:214566
C8 1159..1233 CDD:214843
beta-trefoil_ABD_ABFB-like 1238..1389 CDD:483964 5/16 (31%)
PHA03247 <1459..1974 CDD:223021 58/271 (21%)
VWD 2104..2258 CDD:459671
C8 2294..2362 CDD:214843
TIL 2365..2426 CDD:460351
CT 2834..2916 CDD:214482
Blue background indicates that the domain is not in the aligned region.

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