DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rcd2 and crim1

DIOPT Version :10

Sequence 1:NP_649244.3 Gene:Rcd2 / 40283 FlyBaseID:FBgn0037012 Length:452 Species:Drosophila melanogaster
Sequence 2:XP_002936419.1 Gene:crim1 / 100488895 XenbaseID:XB-GENE-481452 Length:1030 Species:Xenopus tropicalis


Alignment Length:224 Identity:61/224 - (27%)
Similarity:85/224 - (37%) Gaps:76/224 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 LQSCAMPIIDPDSIDESLACPP-----CEND----------------------------FPICYK 45
            |..| .|:...|.  .::.|||     |..|                            ||:|..
 Frog   237 LYEC-KPVFSVDC--STVECPPVQQVICPLDSYETQVRLTADGCCTLPTRCECLSGLCTFPVCDA 298

  Fly    46 VIVE--VERGNGLPGSCCPRYECLDE-EPVC--------DGSKRRFYKNKCTVCDPCEP-----L 94
            ..:.  |.||:|.||.||..:||::| :|.|        ||.  .|..:.|..| .|:.     .
 Frog   299 GSIPRIVSRGDGTPGKCCDVFECVNETKPACIFNNVEYYDGD--MFRMDACRFC-RCQGGVSICF 360

  Fly    95 AIQCKEI------------CPM-EEP-----EPICLSDNNEYHRNGDIWMENNGCTTCMCEGGYV 141
            :.||.|:            ||: |:|     :|.....|.:...:||.|.|:: ||.|.|..|..
 Frog   361 SAQCGELHCDRYYVPEGECCPVCEDPVYPVHDPAGCYANGQIRSHGDRWREDD-CTFCQCINGEP 424

  Fly   142 TRNAVQCNHYYRCNNPVEVKGQCCPVCPD 170
            ...|..|..  .|..||:|.|:|||||.:
 Frog   425 HCVATACGQ--SCLKPVKVPGECCPVCEE 451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rcd2NP_649244.3 VWC 114..168 CDD:214564 20/53 (38%)
crim1XP_002936419.1 IGFBP 32..83 CDD:459717
VWC 329..383 CDD:214564 12/56 (21%)
VWC 396..449 CDD:214564 20/55 (36%)
Antistasin 532..557 CDD:460713
Antistasin 560..585 CDD:460713
VWC 605..655 CDD:450195
VWC 676..727 CDD:450195
VWC 751..801 CDD:450195
VWC 812..866 CDD:450195
CRIM1_C 900..1030 CDD:437274
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.