DRSC/TRiP Functional Genomics Resources

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Protein Alignment rrp9 and U3-55K

DIOPT Version :9

Sequence 1:NP_001112367.1 Gene:rrp9 / 402808 ZFINID:ZDB-GENE-060427-1 Length:471 Species:Danio rerio
Sequence 2:NP_001014529.1 Gene:U3-55K / 3346176 FlyBaseID:FBgn0053505 Length:484 Species:Drosophila melanogaster


Alignment Length:487 Identity:204/487 - (41%)
Similarity:306/487 - (62%) Gaps:33/487 - (6%)


- Green bases have known domain annotations that are detailed below.


Zfish     2 SSFFI-------KKKLVSSATNKGDLKRKSNTDDGKG---------RSKRFSKRMNEEISSDSEN 50
            ||||:       ||:...:||.||...:|.. ..||.         :.:|..|..:|||:||.|.
  Fly     3 SSFFLKPGAKGTKKRKNPAATTKGKPLKKGG-KPGKSTPAAGGPVPKKQRRPKEEDEEIASDDEE 66

Zfish    51 ESADPGRKQQ----ENEEDEIEETAQEKKLRLAKLYLDQLREEEDKKAEEESFEADLIAGRLQED 111
            .::|.|....    .::|.| |||.|:|:|||||.||.::.::|.::||:... |..:..|||.:
  Fly    67 YNSDLGGDDNTLAFSSDEGE-EETPQDKRLRLAKQYLSEIEKQEAERAEDREL-AQSVEQRLQTE 129

Zfish   112 VLEQKGKLQRLIAKELKAPDPAEIRLLRGHKLPVTCLVITPDEKHIFSASKDCSIIKWDVESGKK 176
            .|:..|||:|.||..|||.:.:.|...:.|..|:..|.::||.|.:::.:|...::||..|:||.
  Fly   130 YLDSVGKLRRNIAGSLKACESSRILKHKLHHTPICALALSPDGKFLYTGAKSQFLLKWCTETGKV 194

Zfish   177 VQK--IAGGRKGTE--DCHTAHILCMAISSDGKYLASGDMNKHIMIWDPETCKHLFKFTGHRGAI 237
            ::|  :...|:..|  ....:|::.:.:|||.||||..:...||.||.|:|.||:....|||.::
  Fly   195 LEKSDVLSHREEPETGKKRRSHVISICLSSDMKYLALAEGGPHIQIWCPQTMKHIKTLKGHRDSV 259

Zfish   238 SGLAFRRGTHTLYSASHDRSIKVWSVDENAYVETLFGHQDAITGLDCLSRERCVTTGGRDRTVRV 302
            :||.||:|||.||||:.|||:|:||:||.||||:|||||.|:|.:|.|||||.:|.||.|.::|:
  Fly   260 AGLVFRKGTHDLYSAAKDRSVKIWSLDEMAYVESLFGHQTAVTSIDALSRERAITAGGSDCSLRI 324

Zfish   303 WKIAEESQLVFHGHEGSIDCVQLINEEHMVTGGDDGAVSIWTVNKKKPLSSVKQAHGVRGSAGLE 367
            |||.|||||:::||:.||:||:.||:||.|:||.|||:.:|:..||||:.:.:.|||| |..|:.
  Fly   325 WKITEESQLIYNGHKDSIECVKYINDEHFVSGGMDGAIGLWSALKKKPICTTQLAHGV-GENGVA 388

Zfish   368 QPYWVSSVAALHNSDTVASGASGSHNSSVQLWKCGQGFRGLELLFSVPVNGFVNSLKFSNSGKFL 432
            .  |::::|.:.|:|.|   |:||.:..|:||:.....|.:.|:.|:.:.||:|.|.|:..|..|
  Fly   389 N--WITAIAVVVNTDLV---ATGSCDGCVRLWQTNPNARKMNLIQSISIAGFINGLAFNADGSKL 448

Zfish   433 VAGVGQEHRLGRWWRIKEAKNGLYIIPLKRQA 464
            ....|||||||||||:|||||.:.::.:|.|:
  Fly   449 FVATGQEHRLGRWWRLKEAKNQVVVLDVKLQS 480

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rrp9NP_001112367.1 WD40 114..>445 CDD:225201 148/334 (44%)
WD40 134..435 CDD:238121 132/304 (43%)
WD40 repeat 145..190 CDD:293791 13/48 (27%)
WD40 repeat 196..232 CDD:293791 15/35 (43%)
WD40 repeat 237..273 CDD:293791 23/35 (66%)
WD40 repeat 280..314 CDD:293791 20/33 (61%)
WD40 repeat 320..355 CDD:293791 18/34 (53%)
WD40 repeat 372..413 CDD:293791 12/40 (30%)
WD40 repeat 420..445 CDD:293791 12/24 (50%)
U3-55KNP_001014529.1 Upf2 55..>125 CDD:281974 26/71 (37%)
WD40 <150..484 CDD:225201 150/337 (45%)
WD40 156..416 CDD:295369 120/265 (45%)
WD40 repeat 163..203 CDD:293791 11/39 (28%)
WD40 repeat 218..254 CDD:293791 15/35 (43%)
WD40 repeat 259..295 CDD:293791 23/35 (66%)
WD40 repeat 302..336 CDD:293791 20/33 (61%)
WD40 repeat 342..379 CDD:293791 18/36 (50%)
WD40 repeat 391..431 CDD:293791 13/42 (31%)
WD40 repeat 436..461 CDD:293791 12/24 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170581745
Domainoid 1 1.000 69 1.000 Domainoid score I9638
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3452
Inparanoid 1 1.050 377 1.000 Inparanoid score I2048
OMA 1 1.010 - - QHG54739
OrthoDB 1 1.010 - - D453052at33208
OrthoFinder 1 1.000 - - FOG0004346
OrthoInspector 1 1.000 - - oto40513
orthoMCL 1 0.900 - - OOG6_102033
Panther 1 1.100 - - LDO PTHR19865
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1935
SonicParanoid 1 1.000 - - X3065
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1413.940

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