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Protein Alignment mTerf3 and Mterf1

DIOPT Version :9

Sequence 1:	NP_649240.1	Gene:	mTerf3 / 40279	FlyBaseID:	FBgn0037008	Length:	354	Species:	Drosophila melanogaster
Sequence 2:	NP_445951.1	Gene:	Mterf1 / 85261	RGDID:	621318	Length:	374	Species:	Rattus norvegicus

Alignment Length:	315	Identity:	63/315 - (20%)
Similarity:	108/315 - (34%)	Gaps:	102/315 - (32%)

- Green bases have known domain annotations that are detailed below.

  Fly    89 NSSTLQQFLSLGVDLHSIERR---------------------KGLGDFVL--------------- 117
            |...|...|::|||:....||                     ||..|.|:
  Rat    49 NGDLLNNLLTMGVDVDMARRRQPGVFNKAVTNEQELKMFLLSKGASDKVIGSIISRYPRAITRTP 113

  Fly   118 ------------------------------------KLDFEKNVKPYITFLVDQGVSPDDFGRMF 146
                                                .|:.|.|:|    ||...|::.....|:.
  Rat   114 ESLSKRWDLWREIMASDLEIVNILERSPESFFRSNNNLNLENNIK----FLCSVGLTHKCLCRLL 174

  Fly   147 TKNPLLFKEDLDDLQTRVNYLKSKRFS-------DEARQRILTQNPYWLMFSTRRVDRRLGYFQK 204
            |..|..|...|:..:..|.:|:....|       |..| :|:::||..|:.||:||...:.:.|.
  Rat   175 TSAPRTFSNSLNLNKQMVEFLQETGISLGHNNPTDFVR-KIISKNPSILIQSTKRVKTNIEFLQS 238

  Fly   205 EFKLSGHDLRLLATREPNA---------ITYNMEHLRKSVFTLKEEMGFNAKELSDLVVRKPRLL 260
            .|.|...||.||.. .|.|         ...|..:::|.:.:|    |...:|:...|:....::
  Rat   239 TFNLDKEDLLLLIC-GPGARILDLSNDCTKRNYTNIKKRLLSL----GCTEEEVQKFVLSYLNMI 298

  Fly   261 MIPPDDLVERFSYIHQDMGLPHAQIVQCPELLASREFRLRERHEFLKLLGRAQYD 315
            .:......::...:.::. :..:||::.|.:|.|....|:.|   ::.|..|.||
  Rat   299 FLSEKKFNDKIDCLLEEK-ISTSQILENPRVLDSSIHTLKTR---IRELAHAGYD 349

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.