DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment atk and SRF5

DIOPT Version :9

Sequence 1:NP_001262113.1 Gene:atk / 40266 FlyBaseID:FBgn0036995 Length:1535 Species:Drosophila melanogaster
Sequence 2:NP_178019.2 Gene:SRF5 / 844238 AraportID:AT1G78980 Length:699 Species:Arabidopsis thaliana


Alignment Length:578 Identity:120/578 - (20%)
Similarity:187/578 - (32%) Gaps:188/578 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   633 LEAITDNFFSNNSRLEQLDLSRNLIRSISPTAF---------DTQRSLEYLDLSGNALLDISVG- 687
            |:|.|||  ...|.|..:..|.|     ||:..         ..:.|.|.:...|:::.::.:. 
plant    20 LQAKTDN--QEVSALNVMFTSLN-----SPSKLKGWKANGGDPCEDSWEGVKCKGSSVTELQLSG 77

  Fly   688 ----------LGNLNNLRDIDLSYNQISRIQSDVIGGWRNVVEIRLSNNLIVELQQGTFRNLPKL 742
                      |.||.:|...|||.|                   .|..|:..:|.       |.:
plant    78 FELGGSRGYLLSNLKSLTTFDLSKN-------------------NLKGNIPYQLP-------PNI 116

  Fly   743 QYLDLSSNEIRNVEPGALKGLDELQEFVLADNKL-VELKDHVFEELPSLLASHFQYNKLRYISPE 806
            ..||.|.||:....|.:|..:..||...|..||| .||.| :|::|..|....|..|||....|:
plant   117 ANLDFSENELDGNVPYSLSQMKNLQSINLGQNKLNGELPD-MFQKLSKLETLDFSLNKLSGKLPQ 180

  Fly   807 SFHNANSLVFLNLSNNHFRNMENIGLRSMRNLEVLDLSTNGVKLVSTMPLKALNWLVELKMDNNQ 871
            ||.|..||..|:|.:|.|....|:    :|||.:.||:                      :::||
plant   181 SFANLTSLKKLHLQDNRFTGDINV----LRNLAIDDLN----------------------VEDNQ 219

  Fly   872 ICRIQGSPFE-TMPRLRVLSMRNNQLRSIKERTFRNVRGNIAILDVDGNPIDCNCEMQWLSVWLQ 935
                    || .:|         |:|:.|..            |...||.            |..
plant   220 --------FEGWIP---------NELKDIDS------------LLTGGND------------WST 243

  Fly   936 ETNFPYP----------GPKCQDGRLLRSARMERSLCVGADI------------------YGNER 972
            ||..|.|          |.|...|....:..:....|:|..:                  :..:.
plant   244 ETAPPPPPGVKYGRKSSGSKDGGGITAGTGMVIAGACLGVLVLIIVLIALVSKKKSSLSPHFIDE 308

  Fly   973 TDGNQLP---LLNEHGDVFQRDLPDDFNDECEAGEGTRLPGDRPLVGESEYFYDQYVDATEAPDT 1034
            .:.:..|   .|..||..  ::|..||.::.:.|:... .||..:..........|| ::.....
plant   309 DNSHHTPKFKSLTSHGSA--QELRVDFGNDYKDGKSGD-SGDENIHRIGSKGLKHYV-SSRVMSF 369

  Fly  1035 THSAISTSQRPKPTPTINSNIDLNNTILHTKYFNRKPQPGSGSPFTFFGYPLPSVSLGRFFGFGD 1099
            |.:..:.....|.|.:..|.::...:.|.:...|..|                    |...|.|.
plant   370 TDTEFANKLNAKRTTSTRSAVEFELSDLQSATANFSP--------------------GNLLGEGS 414

  Fly  1100 RGRKQRTDSNDDMP-ATHRMAHISLPSGRGK---------TRMYQPNSAEFEKYLKDQ 1147
            .||..|...:|... |..::......||:.:         :::...|.||...|..:|
plant   415 IGRVYRAKYSDGRTLAVKKIDSTLFDSGKSEGITPIVMSLSKIRHQNIAELVGYCSEQ 472

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
atkNP_001262113.1 leucine-rich repeat 69..89 CDD:275380
leucine-rich repeat 90..113 CDD:275380
leucine-rich repeat 115..138 CDD:275380
leucine-rich repeat 139..160 CDD:275380
leucine-rich repeat 161..184 CDD:275380
LRR_8 183..244 CDD:290566
leucine-rich repeat 185..209 CDD:275380
LRR_4 209..247 CDD:289563
leucine-rich repeat 210..233 CDD:275380
leucine-rich repeat 234..259 CDD:275380
LRR_RI 250..492 CDD:238064
LRR_8 259..318 CDD:290566
leucine-rich repeat 260..283 CDD:275380
leucine-rich repeat 284..307 CDD:275380
leucine-rich repeat 308..359 CDD:275380
leucine-rich repeat 334..348 CDD:275378
LRR_8 358..418 CDD:290566
leucine-rich repeat 360..383 CDD:275380
leucine-rich repeat 384..407 CDD:275380
LRR_8 406..466 CDD:290566
leucine-rich repeat 408..431 CDD:275380
leucine-rich repeat 432..455 CDD:275380
LRR_RI 447..705 CDD:238064 22/91 (24%)
LRR_8 454..514 CDD:290566
leucine-rich repeat 456..476 CDD:275380
leucine-rich repeat 480..501 CDD:275380
leucine-rich repeat 505..517 CDD:275378
leucine-rich repeat 525..550 CDD:275380
LRR_8 549..609 CDD:290566
leucine-rich repeat 551..574 CDD:275380
leucine-rich repeat 575..598 CDD:275380
leucine-rich repeat 599..622 CDD:275380
LRR_8 622..681 CDD:290566 14/56 (25%)
leucine-rich repeat 623..646 CDD:275380 5/12 (42%)
LRR_RI 647..896 CDD:238064 65/270 (24%)
leucine-rich repeat 647..670 CDD:275380 5/31 (16%)
leucine-rich repeat 671..693 CDD:275380 5/32 (16%)
leucine-rich repeat 694..717 CDD:275380 5/22 (23%)
LRR_8 716..776 CDD:290566 15/59 (25%)
leucine-rich repeat 718..741 CDD:275380 3/22 (14%)
leucine-rich repeat 742..763 CDD:275380 7/20 (35%)
LRR_8 765..824 CDD:290566 25/59 (42%)
leucine-rich repeat 766..789 CDD:275380 11/23 (48%)
leucine-rich repeat 790..813 CDD:275380 9/22 (41%)
leucine-rich repeat 814..835 CDD:275380 6/20 (30%)
leucine-rich repeat 838..861 CDD:275380 3/22 (14%)
LRR_8 862..921 CDD:290566 11/59 (19%)
leucine-rich repeat 862..885 CDD:275380 4/23 (17%)
leucine-rich repeat 886..906 CDD:275380 3/19 (16%)
TPKR_C2 919..>946 CDD:301599 7/36 (19%)
SRF5NP_178019.2 LRRNT_2 25..65 CDD:369783 10/46 (22%)
leucine-rich repeat 70..93 CDD:275380 3/22 (14%)
PLN00113 <73..680 CDD:215061 106/518 (20%)
leucine-rich repeat 94..115 CDD:275380 8/46 (17%)
leucine-rich repeat 116..139 CDD:275380 7/22 (32%)
leucine-rich repeat 140..163 CDD:275380 11/23 (48%)
leucine-rich repeat 164..187 CDD:275380 9/22 (41%)
leucine-rich repeat 188..209 CDD:275380 8/24 (33%)
leucine-rich repeat 210..230 CDD:275380 9/58 (16%)
PKc_like 410..675 CDD:389743 14/63 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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