DRSC/TRiP Functional Genomics Resources

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Protein Alignment atk and AT1G56130

DIOPT Version :9

Sequence 1:NP_001262113.1 Gene:atk / 40266 FlyBaseID:FBgn0036995 Length:1535 Species:Drosophila melanogaster
Sequence 2:NP_176009.1 Gene:AT1G56130 / 842065 AraportID:AT1G56130 Length:1032 Species:Arabidopsis thaliana


Alignment Length:513 Identity:107/513 - (20%)
Similarity:190/513 - (37%) Gaps:113/513 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   402 LMAMPALRELRMRNNSLSSDLPLPFWNLPGLKGLDLAQNQFARVDSQLLAGLPSLRRLDLSENGL 466
            |..:..|..|.:..|.|:..||....||..::.:....|..:....:.:..|..||.|.:|.|..
plant   119 LWTLTYLTNLNLGQNVLTGSLPPAIGNLTRMQWMTFGINALSGPVPKEIGLLTDLRLLGISSNNF 183

  Fly   467 IELAPNSFRHNPLLETLNISSNELT---KIHSSTLIHLERLFEVDASY-NQLKSVIAGLPRIVER 527
            ....|:.......|:.:.|.|:.|:   .:..:.|:.||:.:..|... :|:...|....::. .
plant   184 SGSIPDEIGRCTKLQQMYIDSSGLSGRIPLSFANLVQLEQAWIADLEVTDQIPDFIGDWTKLT-T 247

  Fly   528 ISLKGNQITS-LPAAASKDLQLPNLRMLDLSQNRIEQLPRHGFQGAMELRVLSLAQNELRQLKDT 591
            :.:.|..::. :|::.|....|..||:.|:|.                      ..:.|..:||.
plant   248 LRIIGTGLSGPIPSSFSNLTSLTELRLGDISS----------------------GSSSLDFIKDM 290

  Fly   592 SFIGIQRLELLHLQENQLGEADERALLPLAELRNLNLQSNKLEAITDNFFSNNSRLEQLDLSRNL 656
            ..:.:                             |.|::|.|.....:....:|.|.|:|||.|.
plant   291 KSLSV-----------------------------LVLRNNNLTGTIPSTIGEHSSLRQVDLSFNK 326

  Fly   657 IRSISPTAFDTQRSLEYLDLSGNALLDISVGLGNLNNLRDIDLSYNQISRIQSDVIGGWRNVVEI 721
            :....|.:......|.:|.| ||..|:.|.......:||::|:|||.:    |..:..|.::..:
plant   327 LHGPIPASLFNLSQLTHLFL-GNNTLNGSFPTQKTQSLRNVDVSYNDL----SGSLPSWVSLPSL 386

  Fly   722 RL---SNNLIVE------------LQQGTFRNLPKLQYLDLSSN----EIRNVEPGALKGLDELQ 767
            :|   :||..:|            ||:....|..|..|.|.|.|    |.|:| .||        
plant   387 KLNLVANNFTLEGLDNRVLPGLNCLQKNFPCNRGKGIYSDFSINCGGPEKRSV-TGA-------- 442

  Fly   768 EFVLADNKLVELKDHVFEELPSLLASHFQYNKLRYI--SPESFHNANSLVFLNLSNNHFRN-MEN 829
                    |.|.:|..|..     ||.|.....|:.  |...|..:::.:::..|.:.|.| :::
plant   443 --------LFEREDEDFGP-----ASFFVSAGQRWAASSVGLFAGSSNNIYIATSQSQFVNTLDS 494

  Fly   830 IGLRSMRNLEVLDLSTNGVKLVSTMPLKALNWLVELKMDNNQICRIQGSPFETMPRLR 887
            ...:|.|      ||.:.|:... :.|:...:.|.|:....||.....:.::.:.|.|
plant   495 ELFQSAR------LSASSVRYYG-LGLENGGYTVTLQFAEIQILGSTSTTWKGLGRRR 545

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
atkNP_001262113.1 leucine-rich repeat 69..89 CDD:275380
leucine-rich repeat 90..113 CDD:275380
leucine-rich repeat 115..138 CDD:275380
leucine-rich repeat 139..160 CDD:275380
leucine-rich repeat 161..184 CDD:275380
LRR_8 183..244 CDD:290566
leucine-rich repeat 185..209 CDD:275380
LRR_4 209..247 CDD:289563
leucine-rich repeat 210..233 CDD:275380
leucine-rich repeat 234..259 CDD:275380
LRR_RI 250..492 CDD:238064 21/92 (23%)
LRR_8 259..318 CDD:290566
leucine-rich repeat 260..283 CDD:275380
leucine-rich repeat 284..307 CDD:275380
leucine-rich repeat 308..359 CDD:275380
leucine-rich repeat 334..348 CDD:275378
LRR_8 358..418 CDD:290566 4/15 (27%)
leucine-rich repeat 360..383 CDD:275380
leucine-rich repeat 384..407 CDD:275380 1/4 (25%)
LRR_8 406..466 CDD:290566 15/59 (25%)
leucine-rich repeat 408..431 CDD:275380 8/22 (36%)
leucine-rich repeat 432..455 CDD:275380 2/22 (9%)
LRR_RI 447..705 CDD:238064 53/262 (20%)
LRR_8 454..514 CDD:290566 14/63 (22%)
leucine-rich repeat 456..476 CDD:275380 6/19 (32%)
leucine-rich repeat 480..501 CDD:275380 5/23 (22%)
leucine-rich repeat 505..517 CDD:275378 2/12 (17%)
leucine-rich repeat 525..550 CDD:275380 4/25 (16%)
LRR_8 549..609 CDD:290566 7/59 (12%)
leucine-rich repeat 551..574 CDD:275380 4/22 (18%)
leucine-rich repeat 575..598 CDD:275380 3/22 (14%)
leucine-rich repeat 599..622 CDD:275380 0/22 (0%)
LRR_8 622..681 CDD:290566 17/58 (29%)
leucine-rich repeat 623..646 CDD:275380 4/22 (18%)
LRR_RI 647..896 CDD:238064 64/263 (24%)
leucine-rich repeat 647..670 CDD:275380 7/22 (32%)
leucine-rich repeat 671..693 CDD:275380 7/21 (33%)
leucine-rich repeat 694..717 CDD:275380 8/22 (36%)
LRR_8 716..776 CDD:290566 17/78 (22%)
leucine-rich repeat 718..741 CDD:275380 7/37 (19%)
leucine-rich repeat 742..763 CDD:275380 9/24 (38%)
LRR_8 765..824 CDD:290566 11/60 (18%)
leucine-rich repeat 766..789 CDD:275380 4/22 (18%)
leucine-rich repeat 790..813 CDD:275380 6/24 (25%)
leucine-rich repeat 814..835 CDD:275380 3/21 (14%)
leucine-rich repeat 838..861 CDD:275380 4/22 (18%)
LRR_8 862..921 CDD:290566 6/26 (23%)
leucine-rich repeat 862..885 CDD:275380 4/22 (18%)
leucine-rich repeat 886..906 CDD:275380 1/2 (50%)
TPKR_C2 919..>946 CDD:301599
AT1G56130NP_176009.1 leucine-rich repeat 125..148 CDD:275380 8/22 (36%)
leucine-rich repeat 149..172 CDD:275380 2/22 (9%)
leucine-rich repeat 173..196 CDD:275380 6/22 (27%)
leucine-rich repeat 197..244 CDD:275380 10/46 (22%)
leucine-rich repeat 221..242 CDD:275380 5/20 (25%)
leucine-rich repeat 245..268 CDD:275380 3/23 (13%)
leucine-rich repeat 269..292 CDD:275380 8/44 (18%)
leucine-rich repeat 293..316 CDD:275380 4/51 (8%)
leucine-rich repeat 317..340 CDD:275380 7/22 (32%)
leucine-rich repeat 341..362 CDD:275380 7/21 (33%)
Malectin 427..613 CDD:288557 32/148 (22%)
S_TKc 694..937 CDD:214567
STKc_IRAK 700..962 CDD:270968
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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