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Protein Alignment atk and RLP38

DIOPT Version :9

Sequence 1:	NP_001262113.1	Gene:	atk / 40266	FlyBaseID:	FBgn0036995	Length:	1535	Species:	Drosophila melanogaster
Sequence 2:	NP_188953.1	Gene:	RLP38 / 821887	AraportID:	AT3G23120	Length:	784	Species:	Arabidopsis thaliana

Alignment Length:	773	Identity:	170/773 - (21%)
Similarity:	270/773 - (34%)	Gaps:	191/773 - (24%)

- Green bases have known domain annotations that are detailed below.

  Fly   159 LSLTYLSVQTGALQELPSHLFRHLPKLQHIHITGGSGLTRLEAGLFDGLISLKNLDLSHNGLNWI 223
            |.|.:||..:.:|:. .|.||    ||||                      |.:||||:..|...
plant    88 LKLYFLSTASTSLKS-SSALF----KLQH----------------------LTHLDLSNCNLQGE 125

  Fly   224 HLRALSRLPNLVSLKLSHNQISDVGMVGRIVKDLEHLKKLRLDNNLITVIEDGSFVDLPNLSELH 288
            ...::..|.:|..|.||.|.:  ||.|...:.:|..|:.:.|..|.:......||.:|..||.|.
plant   126 IPSSIENLSHLTHLDLSTNHL--VGEVPASIGNLNQLEYIDLRGNHLRGNIPTSFANLTKLSLLD 188

  Fly   289 LNDNRITELQYGAFLRTPQLKTIYLQNNLIRRIHPESLLQASGSGVEAVHMYNNEIGHVEALRAL 353
            |::|..|                                   |..:                  :
plant   189 LHENNFT-----------------------------------GGDI------------------V 200

  Fly   354 LDALPRLRYLDMSGNLLSELPYGALRGHGTLEQLHLNHNHLRLIERDALMAMPALRELRMRNNSL 418
            |..|..|..||:|.|.........|.|...|||:..|                        .||.
plant   201 LSNLTSLAILDLSSNHFKSFFSADLSGLHNLEQIFGN------------------------ENSF 241

  Fly   419 SSDLPLPFWNLPGLKGLDLAQNQF-ARVDSQLLAGLPSLRRLDLSENGLIELAPNSFRHNPLLET 482
            ....|.....:..|..:.|:|||| ..:|....:....|..||:|.|..|...|:|......||.
plant   242 VGLFPASLLKISSLDKIQLSQNQFEGPIDFGNTSSSSRLTMLDISHNNFIGRVPSSLSKLVNLEL 306

  Fly   483 LNISSNELTKIHSSTLIHLERLFEVDASYNQLKSVIAGLPRIVERISLKGNQITSLPAAASKDLQ 547
            |::|.|....:...::..|..|..:|.|||:|:..:   |..:.:.|
plant   307 LDLSHNNFRGLSPRSISKLVNLTSLDISYNKLEGQV---PYFIWKPS------------------ 350

  Fly   548 LPNLRMLDLSQNRIEQLPR--HGFQGAMELRVLSLAQNELRQLKDTSFIGIQRLELLHLQENQLG 610
              ||:.:|||.|....|.:  ....|| :|..|:|..|.|:..........:.:..|.|.:|:..
plant   351 --NLQSVDLSHNSFFDLGKSVEVVNGA-KLVGLNLGSNSLQGPIPQWICNFRFVFFLDLSDNRFT 412

  Fly   611 EADERALLPLAELRNLNLQSNKLEAITDNFFSNNSRLEQLDLSRNLIRSISPTAFDTQRSLEYLD 675
            .:..:.|....:...|||::|.|.........:::.|..||:|.|......|.:....:.:|:|:
plant   413 GSIPQCLKNSTDFNTLNLRNNSLSGFLPELCMDSTMLRSLDVSYNNFVGKLPKSLMNCQDMEFLN 477

  Fly   676 LSGNALLD-ISVGLGNLNN--------------------------LRDIDLSYNQ-ISRIQSDVI 712
            :.||.:.| ....||:..:                          |..||:|.|. :..:..|..
plant   478 VRGNKIKDTFPFWLGSRKSLMVLVLRSNAFYGPVYNSTTYLGFPRLSIIDISNNDFVGSLPQDYF 542

  Fly   713 GGWRNVVEI----RLS---NNLIVELQQGTFRNLPKLQYLDLSSNEIRNVEPGALKGLDELQEFV 770
            ..|..:..:    ||:   |.....:|.|..:.:.:..|:..:.|...:....|.||:|.....:
plant   543 ANWTEMATVWDINRLNYARNTSSRTIQYGGLQTIQRSNYVGDNFNMHADSMDLAYKGVDTDFNRI 607

  Fly   771 LADNKLVELKDHVFEELPSLLASHFQYNKLRYISPESFHNANSLVFLNLSNNHFRNMENIGLRSM 835
            ....|:::...:.|       :.|.         |.|....:.|:.||||.|.|.......|.::
plant   608 FRGFKVIDFSGNRF-------SGHI---------PRSIGLLSELLHLNLSGNAFTGNIPPSLANI 656

  Fly   836 RNLEVLDLSTNGVKLVSTMPLKALNWLVELKMDNNQICRIQGSPFETMPRLRVLSMRN 893
            .|||.||||.|.:.......|..|::|..:...:|   .:||    .:||......:|
plant   657 TNLETLDLSRNNLSGEIPRSLGNLSFLSNINFSHN---HLQG----FVPRSTQFGTQN 707

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.