DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment atk and RLP19

DIOPT Version :9

Sequence 1:NP_001262113.1 Gene:atk / 40266 FlyBaseID:FBgn0036995 Length:1535 Species:Drosophila melanogaster
Sequence 2:NP_179112.1 Gene:RLP19 / 815997 AraportID:AT2G15080 Length:983 Species:Arabidopsis thaliana


Alignment Length:1007 Identity:224/1007 - (22%)
Similarity:362/1007 - (35%) Gaps:269/1007 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   157 GLLSLTYLSVQT-GALQELPSHLFRHL--PKLQHIHITGGSGLTRLEAGLFDGLISLKNLDLSHN 218
            |.::|::|.:.. ..|.|..:.. |||  |......:...:....||...||..|.||....::|
plant     4 GYITLSFLIILIFNFLDEFAAST-RHLCDPDQSDAILEFKNEFETLEESCFDSNIPLKTESWTNN 67

  Fly   219 G--LNWIHLRALSRLPNLVSLKLS----HNQISDVGMVGRIVKDLEHLKKLRLDNNLITVIEDGS 277
            .  ..|..::..::..:::.|.||    ..|::....:.|: ..|..|..|.|.||........|
plant    68 SDCCYWDGIKCDAKFGDVIELDLSFSCLRGQLNSNSSLFRL-PQLRFLTTLDLSNNDFIGQIPSS 131

  Fly   278 FVDLPNLSELHLNDNR--------ITELQYGAFLRTPQLKTIYLQNNLIRRIHPESLLQASGSGV 334
            ...|.||:.|.|:.|.        |..|.:..|:.       :..||...:| |.||...|    
plant   132 LETLSNLTTLDLSRNHFSGRIPSSIGNLSHLIFVD-------FSHNNFSGQI-PSSLGYLS---- 184

  Fly   335 EAVHM------YNNEIGHVEALRALLDALPRLRYLDMSGN-LLSELPYGALRGHGTLEQLHLNHN 392
               |:      |||..|.|.:....|..|..||   :|.| ...|||                  
plant   185 ---HLTSFNLSYNNFSGRVPSSIGNLSYLTTLR---LSRNSFFGELP------------------ 225

  Fly   393 HLRLIERDALMAMPALRELRMRNNSLSSDLPLPFWNLPGLKGLDLAQNQFARVDSQLLAGLPSLR 457
                   .:|.::..|.:|.:..|.....:|....||..|..:||.:|.|.......|..|..|.
plant   226 -------SSLGSLFHLTDLILDTNHFVGKIPSSLGNLSHLTSIDLHKNNFVGEIPFSLGNLSCLT 283

  Fly   458 RLDLSENGLIELAPNSFRHNPLLETLNISSNELTKIHSSTLIHLERLFEVDASYNQLKSVIAGLP 522
            ...||:|.::...|:||.:...|:.||:.||:|:......|::|.:|                  
plant   284 SFILSDNNIVGEIPSSFGNLNQLDILNVKSNKLSGSFPIALLNLRKL------------------ 330

  Fly   523 RIVERISLKGNQIT-SLPAAASKDLQLPNLRMLDLSQNRIE-QLPRHGFQGAMELRVLSLAQNEL 585
               ..:||..|::| :||:..|   .|.||::.|.::|... .||...| ....|:.::|..|:|
plant   331 ---STLSLFNNRLTGTLPSNMS---SLSNLKLFDATENHFTGPLPSSLF-NIPSLKTITLENNQL 388

  Fly   586 R-QLKDTSFIGIQRLELLHLQENQLGEADERALLPLAELRNLNLQSNKLEAITD-NFFSNNSRLE 648
            . .|...:......|.:|.|..|.......|::..|..|:.|:|.:...:.:.| ..||:...:|
plant   389 NGSLGFGNISSYSNLTVLRLGNNNFRGPIHRSISKLVNLKELDLSNYNTQGLVDFTIFSHLKSIE 453

  Fly   649 QLDLSR-NLIRSISP-TAFDTQRSLEYLDLSGNALLDISVGLGNLNN------------------ 693
            .|:||. |...:|.. ....:.:.|:.|||||:.:  .:....:|:|                  
plant   454 YLNLSHLNTTTTIDMYEILSSFKLLDTLDLSGSHV--STTNKSSLSNSSLVLISQLYLSGCGITE 516

  Fly   694 ----LRD------IDLSYNQISRIQSDVIGGWRNVVE----IRLSNNLIVELQQGT--------- 735
                ||.      :|:|.|:|    ...:.||..::.    :.||||..:..::.|         
plant   517 FPKFLRSQELMLTLDISNNKI----KGQVPGWLWMLPVLNYVNLSNNTFIGFERSTKLGLTSIQE 577

  Fly   736 ---------------------FRNLPKLQYLDLSSNEIRNVEPGALKGLDE--LQEFVLADNKLV 777
                                 ...||.|..||.|:|:.....|..:..:..  ||...|..|:|.
plant   578 PPAMRQLFCSNNNFTGNIPSFICELPYLSTLDFSNNKFNGSIPTCMGNIQSPYLQALNLRHNRLS 642

  Fly   778 E-LKDHVFEELPSLLASHFQYNKLRYISPESFHNANSLVFLNLSNNHFRNMENIGLRSMRNLEVL 841
            . |.:::||.|.||...|   |:|....|.|..:.:||..||:.:|...:...:.|.|::.|:||
plant   643 GLLPENIFESLISLDVGH---NQLVGKLPRSLSHISSLGLLNVESNKISDTFPLWLSSLQELQVL 704

  Fly   842 DLSTN--------------------GVKLVSTMPLK-ALNWLVELKMDNNQ-------------- 871
            .|.:|                    |.:...|:|.. .:||.....:|.|:              
plant   705 VLRSNAFYGPIEKTQFSKLRIIDISGNQFNGTLPANFFVNWTAMFSLDENEDQSNGETMSNMYMS 769

  Fly   872 ----------------------------ICRIQGSPFE--------TMPRLRVLSMRNNQLRSIK 900
                                        :....|:.||        .:..|.||::.||.|....
plant   770 TDYFYFDSMVLMNKGVEMELERVLKVFTVIDFSGNKFEGEIPKSIGLLKELHVLNLSNNALSGHI 834

  Fly   901 ERTFRNVRGNIAILDVDGNPI--DCNCEMQWLSVWLQETNFPY-------PG------PKC---Q 947
            ..:..|:.. :..|||..|.:  :...|:..|: :|...||.:       ||      .||   :
plant   835 ASSMGNLMA-LESLDVSQNKLSGEIPQELGKLT-YLAYMNFSHNQLVGLLPGGTQFQTQKCSSFE 897

  Fly   948 DGRLLRSARMERSLCVGADIYGNERTDGNQLP 979
            |...|....:|: :|   ||:|......:..|
plant   898 DNHGLYGPSLEK-IC---DIHGKTPQQSDMAP 925

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
atkNP_001262113.1 leucine-rich repeat 69..89 CDD:275380
leucine-rich repeat 90..113 CDD:275380
leucine-rich repeat 115..138 CDD:275380
leucine-rich repeat 139..160 CDD:275380 1/2 (50%)
leucine-rich repeat 161..184 CDD:275380 7/25 (28%)
LRR_8 183..244 CDD:290566 13/66 (20%)
leucine-rich repeat 185..209 CDD:275380 4/23 (17%)
LRR_4 209..247 CDD:289563 8/43 (19%)
leucine-rich repeat 210..233 CDD:275380 4/24 (17%)
leucine-rich repeat 234..259 CDD:275380 6/28 (21%)
LRR_RI 250..492 CDD:238064 66/256 (26%)
LRR_8 259..318 CDD:290566 17/66 (26%)
leucine-rich repeat 260..283 CDD:275380 7/22 (32%)
leucine-rich repeat 284..307 CDD:275380 7/30 (23%)
leucine-rich repeat 308..359 CDD:275380 15/56 (27%)
leucine-rich repeat 334..348 CDD:275378 5/19 (26%)
LRR_8 358..418 CDD:290566 11/60 (18%)
leucine-rich repeat 360..383 CDD:275380 7/23 (30%)
leucine-rich repeat 384..407 CDD:275380 1/22 (5%)
LRR_8 406..466 CDD:290566 17/59 (29%)
leucine-rich repeat 408..431 CDD:275380 6/22 (27%)
leucine-rich repeat 432..455 CDD:275380 7/22 (32%)
LRR_RI 447..705 CDD:238064 69/291 (24%)
LRR_8 454..514 CDD:290566 16/59 (27%)
leucine-rich repeat 456..476 CDD:275380 7/19 (37%)
leucine-rich repeat 480..501 CDD:275380 7/20 (35%)
leucine-rich repeat 505..517 CDD:275378 0/11 (0%)
leucine-rich repeat 525..550 CDD:275380 8/25 (32%)
LRR_8 549..609 CDD:290566 16/61 (26%)
leucine-rich repeat 551..574 CDD:275380 6/23 (26%)
leucine-rich repeat 575..598 CDD:275380 5/23 (22%)
leucine-rich repeat 599..622 CDD:275380 6/22 (27%)
LRR_8 622..681 CDD:290566 18/61 (30%)
leucine-rich repeat 623..646 CDD:275380 6/23 (26%)
LRR_RI 647..896 CDD:238064 78/386 (20%)
leucine-rich repeat 647..670 CDD:275380 6/24 (25%)
leucine-rich repeat 671..693 CDD:275380 7/21 (33%)
leucine-rich repeat 694..717 CDD:275380 8/28 (29%)
LRR_8 716..776 CDD:290566 17/95 (18%)
leucine-rich repeat 718..741 CDD:275380 6/56 (11%)
leucine-rich repeat 742..763 CDD:275380 6/20 (30%)
LRR_8 765..824 CDD:290566 21/61 (34%)
leucine-rich repeat 766..789 CDD:275380 9/23 (39%)
leucine-rich repeat 790..813 CDD:275380 6/22 (27%)
leucine-rich repeat 814..835 CDD:275380 5/20 (25%)
leucine-rich repeat 838..861 CDD:275380 8/43 (19%)
LRR_8 862..921 CDD:290566 16/108 (15%)
leucine-rich repeat 862..885 CDD:275380 5/72 (7%)
leucine-rich repeat 886..906 CDD:275380 6/19 (32%)
TPKR_C2 919..>946 CDD:301599 8/41 (20%)
RLP19NP_179112.1 PLN00113 3..>646 CDD:331614 163/717 (23%)
leucine-rich repeat 114..137 CDD:275380 7/22 (32%)
leucine-rich repeat 138..161 CDD:275380 6/22 (27%)
leucine-rich repeat 162..185 CDD:275380 8/37 (22%)
leucine-rich repeat 186..209 CDD:275380 6/22 (27%)
leucine-rich repeat 210..233 CDD:275380 9/50 (18%)
leucine-rich repeat 234..257 CDD:275380 6/22 (27%)
leucine-rich repeat 258..281 CDD:275380 7/22 (32%)
leucine-rich repeat 282..305 CDD:275380 7/22 (32%)
leucine-rich repeat 306..329 CDD:275380 8/22 (36%)
leucine-rich repeat 330..351 CDD:275380 8/44 (18%)
leucine-rich repeat 354..377 CDD:275380 6/23 (26%)
leucine-rich repeat 378..402 CDD:275380 5/23 (22%)
leucine-rich repeat 403..424 CDD:275380 5/20 (25%)
leucine-rich repeat 427..451 CDD:275380 6/23 (26%)
leucine-rich repeat 452..477 CDD:275380 6/24 (25%)
leucine-rich repeat 507..526 CDD:275380 2/18 (11%)
leucine-rich repeat 527..550 CDD:275380 6/26 (23%)
leucine-rich repeat 551..574 CDD:275380 5/22 (23%)
leucine-rich repeat 575..604 CDD:275380 1/28 (4%)
PLN00113 <604..692 CDD:331614 27/90 (30%)
leucine-rich repeat 605..630 CDD:275380 6/24 (25%)
leucine-rich repeat 631..655 CDD:275380 9/23 (39%)
PLN00113 <656..739 CDD:331614 20/85 (24%)
leucine-rich repeat 656..676 CDD:275380 6/22 (27%)
leucine-rich repeat 677..700 CDD:275380 6/22 (27%)
leucine-rich repeat 701..722 CDD:275380 5/20 (25%)
leucine-rich repeat 723..795 CDD:275380 7/71 (10%)
leucine-rich repeat 796..819 CDD:275380 3/22 (14%)
PLN00113 <808..962 CDD:331614 28/124 (23%)
leucine-rich repeat 820..843 CDD:275380 7/22 (32%)
leucine-rich repeat 844..867 CDD:275380 6/23 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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