DRSC/TRiP Functional Genomics Resources

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Protein Alignment atk and PODNL1

DIOPT Version :10

Sequence 1:NP_649228.1 Gene:atk / 40266 FlyBaseID:FBgn0036995 Length:1535 Species:Drosophila melanogaster
Sequence 2:XP_011526610.1 Gene:PODNL1 / 79883 HGNCID:26275 Length:579 Species:Homo sapiens


Alignment Length:676 Identity:191/676 - (28%)
Similarity:265/676 - (39%) Gaps:168/676 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 ESCPPSQAILPCRCSLRGKEIQIWCSHSNLPQI-MDG--LKAVERNIKGRIDELVLENNQLPALP 81
            ||..|    ||..|.||       ||...:..: .||  |:....||......|.|:||||..||
Human    35 ESLQP----LPRACPLR-------CSCPRVDTVDCDGLDLRVFPDNITRAAQHLSLQNNQLQELP 88

  Fly    82 GRFFGSLQIVRLMLRHNSIERVSNGWLNELENGLVEIFVVEPQLRSIPAESLNGMINMLAITIQS 146
                           :|.:.|:|......|.|.|                            |.|
Human    89 ---------------YNELSRLSGLRTLNLHNNL----------------------------ISS 110

  Fly   147 EELKHLPD--FSGLLSLTYLSVQTGALQELPSHLFRHLPKLQHIHITGGSGLTRLEAGLFDGLIS 209
            |   .|||  |..|..|.:|.|....|...|..|.|                            |
Human   111 E---GLPDEAFESLTQLQHLCVAHNKLSVAPQFLPR----------------------------S 144

  Fly   210 LKNLDLSHNGLNWIHLRALSRLPNLVSLKLSHNQISDVGMVGRIVKDLEHLKKLRLDNNLITVIE 274
            |:..||:.|.:..|........|.|.|:.|.:||:|:.|:.....:..|.:..|.|.||.::.:.
Human   145 LRVADLAANQVMEIFPLTFGEKPALRSVYLHNNQLSNAGLPPDAFRGSEAIATLSLSNNQLSYLP 209

  Fly   275 DGSFVDLPNLSELHLNDNRITELQYGAFLRTPQLKTIYLQNNLIRRIHPESLLQASGSGVEAVHM 339
            ...   .|:|..|||.:|.|:::..||..|..||:.:|||:|           |.:.||::|   
Human   210 PSL---PPSLERLHLQNNLISKVPRGALSRQTQLRELYLQHN-----------QLTDSGLDA--- 257

  Fly   340 YNNEIGHVEALRALLDALPRLRYLDMSGNLLSELPYGALRGHGTLEQLHLNHNHLRLIERDALMA 404
                        .....|..|.|||:|.|.|:.:|.|..|   ||..|||..|.:|.:|...|..
Human   258 ------------TTFSKLHSLEYLDLSHNQLTTVPAGLPR---TLAILHLGRNRIRQVEAARLHG 307

  Fly   405 MPALRELRMRNNSL-SSDLPL----PFWNLPGLKGLDLAQNQFARVDSQLLAGLP-SLRRLDLSE 463
            ...||.|.:::|.| ||.||.    |   |.||..|.|..|...||.    ..|| .||.|.|..
Human   308 ARGLRYLLLQHNQLGSSGLPAGALRP---LRGLHTLHLYGNGLDRVP----PALPRRLRALVLPH 365

  Fly   464 NGLIELAPNSFRHNPLLETLNISSNELTKIHSSTLIHLERLFEVDASYNQLKSVIAGLPRIVERI 528
            |.:..|........|.|..||::.|.|    :|..:|       ..::.:|        |.:..:
Human   366 NHVAALGARDLVATPGLTELNLAYNRL----ASARVH-------HRAFRRL--------RALRSL 411

  Fly   529 SLKGNQITSLPAAASKDLQLP-NLRMLDLSQNRIEQLPRHGFQGAMELRVLSLAQNELR--QLKD 590
            .|.|||:|.||      :.|| .||.|.|.:|::..|......|..:||.||||.|.||  .:..
Human   412 DLAGNQLTRLP------MGLPTGLRTLQLQRNQLRMLEPEPLAGLDQLRELSLAHNRLRVGDIGP 470

  Fly   591 TSFIGIQRLELLHLQENQLGEADERALLPLAELRNLNLQSNKLEAITDNFFSNNSRLEQLDLSRN 655
            .::..:|.|::|.|..|:|......  ||.| |..|:|:.|::..:....|.:..||..|.|..|
Human   471 GTWHELQALQMLDLSHNELSFVPPD--LPEA-LEELHLEGNRIGHVGPEAFLSTPRLRALFLRAN 532

  Fly   656 LIR--SISPTAFDTQRSLEYLDLSGN 679
            .:.  ||:..||....:|..:|.:||
Human   533 RLHMTSIAAEAFLGLPNLRVVDTAGN 558

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
atkNP_649228.1 leucine-rich repeat 886..906 CDD:275380
PCC 891..>936 CDD:188093
leucine-rich repeat 69..89 CDD:275380 8/19 (42%)
leucine-rich repeat 90..113 CDD:275380 4/22 (18%)
LRR 93..530 CDD:443914 116/444 (26%)
leucine-rich repeat 115..138 CDD:275380 1/22 (5%)
leucine-rich repeat 139..160 CDD:275380 8/22 (36%)
leucine-rich repeat 161..184 CDD:275380 7/22 (32%)
leucine-rich repeat 185..209 CDD:275380 0/23 (0%)
leucine-rich repeat 210..233 CDD:275380 5/22 (23%)
leucine-rich repeat 234..259 CDD:275380 7/24 (29%)
leucine-rich repeat 260..283 CDD:275380 4/22 (18%)
leucine-rich repeat 284..307 CDD:275380 9/22 (41%)
leucine-rich repeat 308..359 CDD:275380 10/50 (20%)
leucine-rich repeat 334..348 CDD:275378 1/13 (8%)
PLN00113 359..>824 CDD:215061 107/332 (32%)
leucine-rich repeat 360..383 CDD:275380 10/22 (45%)
leucine-rich repeat 384..407 CDD:275380 8/22 (36%)
leucine-rich repeat 408..431 CDD:275380 11/27 (41%)
leucine-rich repeat 432..455 CDD:275380 8/23 (35%)
leucine-rich repeat 456..476 CDD:275380 6/19 (32%)
leucine-rich repeat 480..501 CDD:275380 6/20 (30%)
leucine-rich repeat 505..517 CDD:275378 1/11 (9%)
leucine-rich repeat 525..550 CDD:275380 9/25 (36%)
leucine-rich repeat 551..574 CDD:275380 7/22 (32%)
leucine-rich repeat 575..598 CDD:275380 9/24 (38%)
leucine-rich repeat 599..622 CDD:275380 7/22 (32%)
leucine-rich repeat 623..646 CDD:275380 5/22 (23%)
leucine-rich repeat 647..670 CDD:275380 8/24 (33%)
leucine-rich repeat 671..693 CDD:275380 4/9 (44%)
leucine-rich repeat 694..717 CDD:275380
leucine-rich repeat 718..741 CDD:275380
leucine-rich repeat 742..763 CDD:275380
leucine-rich repeat 766..789 CDD:275380
leucine-rich repeat 790..813 CDD:275380
leucine-rich repeat 814..835 CDD:275380
leucine-rich repeat 838..861 CDD:275380
leucine-rich repeat 862..885 CDD:275380
PODNL1XP_011526610.1 LRR <75..321 CDD:443914 92/351 (26%)
leucine-rich repeat 75..97 CDD:275380 10/36 (28%)
leucine-rich repeat 98..123 CDD:275380 11/55 (20%)
leucine-rich repeat 124..168 CDD:275380 13/71 (18%)
PLN00113 157..>534 CDD:215061 134/443 (30%)
leucine-rich repeat 169..194 CDD:275380 7/24 (29%)
leucine-rich repeat 195..215 CDD:275380 4/22 (18%)
leucine-rich repeat 216..239 CDD:275380 9/22 (41%)
leucine-rich repeat 240..265 CDD:275380 10/50 (20%)
leucine-rich repeat 266..287 CDD:275380 10/23 (43%)
leucine-rich repeat 289..310 CDD:275380 7/20 (35%)
leucine-rich repeat 311..336 CDD:275380 11/27 (41%)
leucine-rich repeat 337..358 CDD:275380 8/24 (33%)
leucine-rich repeat 361..428 CDD:275380 23/91 (25%)
leucine-rich repeat 429..452 CDD:275380 7/22 (32%)
leucine-rich repeat 453..478 CDD:275380 9/24 (38%)
leucine-rich repeat 500..523 CDD:275380 5/22 (23%)
leucine-rich repeat 524..547 CDD:275380 8/22 (36%)
Blue background indicates that the domain is not in the aligned region.

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