DRSC/TRiP Functional Genomics Resources

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Protein Alignment atk and lrrc4cb

DIOPT Version :10

Sequence 1:NP_649228.1 Gene:atk / 40266 FlyBaseID:FBgn0036995 Length:1535 Species:Drosophila melanogaster
Sequence 2:XP_005166545.1 Gene:lrrc4cb / 564462 ZFINID:ZDB-GENE-080327-5 Length:631 Species:Danio rerio


Alignment Length:749 Identity:155/749 - (20%)
Similarity:265/749 - (35%) Gaps:196/749 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   649 QLDLSRNLIRS-ISPTAFDTQRSLEYLDLSGNALLDISVGLGNLNNLRDIDLSYNQISRIQSDVI 712
            ||.:...|:|: ..|:..........:..:...|.|:..|:.  .|.|.::|..|||..|:.|..
Zfish    35 QLLVVAGLVRAQTCPSVCSCSNQFSKVICTRRGLKDVPDGVS--TNTRYLNLQDNQIQVIKVDSF 97

  Fly   713 GGWRNVVEIRLSNNLIVELQQGTFRNLPKLQYLDLSSNEIRNVEPGALKGLDELQEFVLADNKLV 777
            ...|::..::||.|.|..::.|.|..|..|..|:|..|.:..:..||.:.|.:|:|..|.:|.:.
Zfish    98 KHLRHLEILQLSRNHIRNIEIGAFNGLTSLNTLELFDNRLTTIPNGAFEYLSKLKELWLRNNPIE 162

  Fly   778 ELKDHVFEELPSLLASHF-QYNKLRYISPESFHNANSLVFLNLSNNHFRNMENIGLRSMRNLEVL 841
            .:....|..||||..... :..:|.|||..:|...::|.:|||...:.:.:.||  :.:..|:.|
Zfish   163 SIPSDAFSRLPSLRRLDLGELKRLSYISSGAFQGLSNLRYLNLGMCNLKEVPNI--QPLIRLDEL 225

  Fly   842 DLSTNGVKLVSTMPLKALNWLVELKMDNNQICRIQGSPFETMPRLRVLSMRNNQLRSIKERTFRN 906
            ::|.|.:.::.....|.|..|.:|.|.:.|:..|:.:.|:.:..||.|::.:|.|..:....:..
Zfish   226 EMSGNQLTVIQPSSFKGLVHLQKLWMMHAQVQTIERNSFDDLHSLRELNLAHNNLTFLPHDLYTP 290

  Fly   907 VRGNIAILDVDGNPIDCNCEMQWLSVWLQET-----------NFPYPGPKCQDGRLLRSARMERS 960
            :. ::..:.:..||.:|||::.|||.||:||           |.| |..|   ||.:........
Zfish   291 LH-HLQRVHLHHNPWNCNCDILWLSWWLRETVPTNTSCCARCNSP-PSLK---GRYIGELDQSYF 350

  Fly   961 LCVGADIYGNERTDGNQLPLLNEHGDVFQRDLPDDFNDECEAGEGTRLPGDRPLVGESEYFYDQY 1025
            .|..              |::.|.        |.|.|    ..||.                   
Zfish   351 QCYA--------------PVIIEP--------PVDLN----LTEGM------------------- 370

  Fly  1026 VDATEAPDTTHSAISTSQRPKPTPTINSNIDLNNTILHTKYFNRKPQPGSGSPFTFFGYPLPSVS 1090
              |.|....|:|..|.|..   ||  |.:|..:.|:                             
Zfish   371 --AAELKCRTNSVTSVSWL---TP--NGSIITHGTL----------------------------- 399

  Fly  1091 LGRFFGFGDRGRKQRTDSNDDMPATHRMAHISLPSGRGKTRMYQPNSAEFEKYLKDQQKQEKLNI 1155
                        |.|.:..:|  .|....:::| ...|....|..|      .|.:......||:
Zfish   400 ------------KMRINVQND--GTLNFTNVTL-QDTGTYTCYVSN------MLGNTSASAILNV 443

  Fly  1156 ARNRYVD-------TDSTTSSMEDALSNES----------GSAATTVGVFRTTFREPSSIERGGF 1203
            ..   ||       |..|..::|..:..||          .|::||.|.       |.:.||...
Zfish   444 TS---VDNSGFSYFTTVTVETIETPIDGESRTPVQPSFGWASSSTTRGT-------PIATERAYT 498

  Fly  1204 RPIVPAHVGGFMPVHDPQQRRGLVEVVNITGNPSEIVQGIGQRKFIPISTQA---------RPKP 1259
            .|:....:.|.:        .||.||:..|    :|:.|.    |:.|:..|         ..|.
Zfish   499 IPVTEIDIDGAL--------NGLEEVMKTT----KIIIGC----FVAITLMAAVMLIIFYKMRKQ 547

  Fly  1260 TKSSGESSETATYEVTETTPDITTTTPLMQRIATSTTKASTTTTRSTTTTSTTQVTPAENNASSS 1324
            .........:.:.|:.....|:|....:...:.....:.......::..|       |.|:.|:.
Zfish   548 HHQQDHDGPSRSMEIISVHEDLTRVPAMESHLTLPPLEHDHYNHYNSYKT-------AYNHVSAL 605

  Fly  1325 TELDSQYDDEDLEAQSVTLLRPPPLVQTTTAETI 1358
            :.|.|.             :..|.|:|.::.:.:
Zfish   606 SSLHSS-------------VHEPLLIQASSKDNV 626

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
atkNP_649228.1 leucine-rich repeat 886..906 CDD:275380 5/19 (26%)
PCC 891..>936 CDD:188093 12/44 (27%)
leucine-rich repeat 69..89 CDD:275380
leucine-rich repeat 90..113 CDD:275380
LRR 93..530 CDD:443914
leucine-rich repeat 115..138 CDD:275380
leucine-rich repeat 139..160 CDD:275380
leucine-rich repeat 161..184 CDD:275380
leucine-rich repeat 185..209 CDD:275380
leucine-rich repeat 210..233 CDD:275380
leucine-rich repeat 234..259 CDD:275380
leucine-rich repeat 260..283 CDD:275380
leucine-rich repeat 284..307 CDD:275380
leucine-rich repeat 308..359 CDD:275380
leucine-rich repeat 334..348 CDD:275378
PLN00113 359..>824 CDD:215061 49/176 (28%)
leucine-rich repeat 360..383 CDD:275380
leucine-rich repeat 384..407 CDD:275380
leucine-rich repeat 408..431 CDD:275380
leucine-rich repeat 432..455 CDD:275380
leucine-rich repeat 456..476 CDD:275380
leucine-rich repeat 480..501 CDD:275380
leucine-rich repeat 505..517 CDD:275378
leucine-rich repeat 525..550 CDD:275380
leucine-rich repeat 551..574 CDD:275380
leucine-rich repeat 575..598 CDD:275380
leucine-rich repeat 599..622 CDD:275380
leucine-rich repeat 623..646 CDD:275380
leucine-rich repeat 647..670 CDD:275380 5/21 (24%)
leucine-rich repeat 671..693 CDD:275380 3/21 (14%)
leucine-rich repeat 694..717 CDD:275380 7/22 (32%)
leucine-rich repeat 718..741 CDD:275380 7/22 (32%)
leucine-rich repeat 742..763 CDD:275380 6/20 (30%)
leucine-rich repeat 766..789 CDD:275380 6/22 (27%)
leucine-rich repeat 790..813 CDD:275380 6/23 (26%)
leucine-rich repeat 814..835 CDD:275380 6/20 (30%)
leucine-rich repeat 838..861 CDD:275380 6/22 (27%)
leucine-rich repeat 862..885 CDD:275380 6/22 (27%)
lrrc4cbXP_005166545.1 LRRNT 48..81 CDD:214470 5/34 (15%)
LRR 76..>303 CDD:443914 60/231 (26%)
leucine-rich repeat 79..102 CDD:275380 7/22 (32%)
leucine-rich repeat 103..126 CDD:275380 7/22 (32%)
leucine-rich repeat 127..150 CDD:275380 7/22 (32%)
leucine-rich repeat 151..174 CDD:275380 6/22 (27%)
leucine-rich repeat 175..199 CDD:275380 6/23 (26%)
leucine-rich repeat 200..221 CDD:275380 6/22 (27%)
leucine-rich repeat 222..245 CDD:275380 6/22 (27%)
leucine-rich repeat 246..269 CDD:275380 6/22 (27%)
leucine-rich repeat 270..291 CDD:275380 5/20 (25%)
LRRCT 302..352 CDD:214507 18/53 (34%)
Ig 355..443 CDD:472250 28/175 (16%)
Ig strand B 372..376 CDD:409353 1/3 (33%)
Ig strand C 383..387 CDD:409353 2/3 (67%)
Ig strand E 409..413 CDD:409353 1/3 (33%)
Ig strand F 423..428 CDD:409353 0/4 (0%)
Ig strand G 436..439 CDD:409353 0/2 (0%)
Blue background indicates that the domain is not in the aligned region.

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