DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment atk and tril

DIOPT Version :9

Sequence 1:NP_001262113.1 Gene:atk / 40266 FlyBaseID:FBgn0036995 Length:1535 Species:Drosophila melanogaster
Sequence 2:XP_009292463.1 Gene:tril / 448885 ZFINID:ZDB-GENE-131218-1 Length:758 Species:Danio rerio


Alignment Length:802 Identity:166/802 - (20%)
Similarity:279/802 - (34%) Gaps:227/802 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   572 AMELRVLSLAQNELRQLKDTSFIGIQRLELLHLQENQLGEADERALLPLAELRNLNLQSNKLEAI 636
            |.::||||||.|.:..:....|                        :...:|..||||.|::.:|
Zfish    57 AEDVRVLSLAGNFIHNISAFDF------------------------MRYGDLMRLNLQFNQIRSI 97

  Fly   637 TDNFFSNNSRLEQLDLSRNLIRSISPTAFDTQRSLEYLDLSGNALLDISVGLGNLNNLRDIDLSY 701
            ....|...|:||:|.|..|||.:|.|                          |.|.:|:.:.:.|
Zfish    98 HPESFKKLSKLEELFLGNNLISTIQP--------------------------GTLQSLKKLTILY 136

  Fly   702 ---NQISRIQSDVIGGWRNVVEIRLSNNLIVELQQGTFRNLPKLQYLDLSSNEIRNVEPGALKGL 763
               |:|:...........::|::||..|.|..|::..|..||.|.:|.|.||.:|.::..|...|
Zfish   137 SNNNEINECIPKSFTHLNSLVKLRLDGNSIEVLKESVFEGLPNLMFLHLESNHLRRIDRNAFLRL 201

  Fly   764 DELQEFVLADNKLVELKD-HVFEELPSLLASHFQYNKLRYISPESFHNANSLVFLNLSNNHFRNM 827
            .:||...|:|||..||:| .:|.:|.||.......|::|::....|.:...|..|:||:|....:
Zfish   202 SKLQFLNLSDNKQTELQDVFMFSDLKSLKTLLIAGNQIRHVGNHVFQSLKKLSKLSLSHNKISKL 266

  Fly   828 ENIGLRSMRNLEVLDLSTNGVKLVSTMPLKALNWLVELKMDNNQICRIQGSPFETMPRLRVLSMR 892
            .|...:.:..:....:..|.:..:....|..|..:..|...:|.|..:....|..:..|::|.::
Zfish   267 GNEAFKGLGRVREFMIDRNELTEIPAGLLDPLERIEHLDFSDNHISLVDQGAFGHLSHLKILKLK 331

  Fly   893 NNQLRSIKERTFRNVRGNIAILDVDGNPIDCNCEMQWLSVWLQETNFPYPGPKCQDGRLLR-SAR 956
            ||:|.::....|.: .|.:..::::||...|:|.|:.|..|:...:        ..|:||. ..|
Zfish   332 NNRLMNLSGSIFAS-NGGLFHVELNGNNWTCDCRMEKLKSWMTHAH--------SQGKLLTVFVR 387

  Fly   957 MERSLCVGADIYGNERTD---GNQL----------PL---LNEHGDVFQRDLPDDFNDECEAGEG 1005
                 |:...:...:..|   ..||          ||   :...|.|.:..:..:..::.|..:.
Zfish   388 -----CLHPPVLAGKYLDYVSNLQLKNMSGFCESEPLSQPMESRGAVVETPVFKEEREKREKHDE 447

  Fly  1006 TRLPGDRPLVGESEYFYDQYVDATEAPDTT----HSAISTSQRPKPTPTINSNIDLNNTILHTKY 1066
            ..:.||:.:.|               |.||    ......|.|||||        ..||      
Zfish   448 VEVQGDQGVQG---------------PGTTLKRKKKRKLASSRPKPT--------ARNT------ 483

  Fly  1067 FNRKPQPGSGSPFTFFGYPLPSVSLGRFFGFGDRGRKQRTDSNDDMPATHRMAHISLPSGRGKTR 1131
                   |:||....|      .::..|.                             .|...:.
Zfish   484 -------GNGSLSDLF------TTMAMFL-----------------------------EGHNYST 506

  Fly  1132 MYQPNSAEFEKYLKDQQKQE--------------KLNIARNRYVDTDSTTSSMEDALSNESGSAA 1182
            .......:|...|:||.|.|              :|:|......|..|.|:::..:.:.::|.|.
Zfish   507 FALTPQEQFNLPLQDQSKYEDSKTAGIADACQFNRLSILNVSVEDITSITATVRWSTTPDTGLAH 571

  Fly  1183 TTVGVFRT-------TFREPSSIERGG---------FRP------------------IVPA-HVG 1212
            .....||.       .||.|..:...|         .||                  :.|. |..
Zfish   572 GKELHFRVLFDRFGHAFRFPRYVYTDGSDRAVTLQELRPESTYITCVESVVDGTLCKVAPRDHCT 636

  Fly  1213 GF---MPVHDPQQRRGLVEVVNITGNP--SEIVQGIGQRKFIPISTQARPKPTKSSGESSETATY 1272
            ||   :|....:....|:.|..:..|.  ..:|.|:...:.:    :.|.:..|||..:.....|
Zfish   637 GFVTLLPSVTTEVNLQLITVAALAANALLLLLVGGVWLGRVL----KRRIRSRKSSAHAHVRHMY 697

  Fly  1273 EVTETTPDITTTTPLMQRIATS 1294
                     :|..|....:||:
Zfish   698 ---------STRHPFRSTVATT 710

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
atkNP_001262113.1 leucine-rich repeat 69..89 CDD:275380
leucine-rich repeat 90..113 CDD:275380
leucine-rich repeat 115..138 CDD:275380
leucine-rich repeat 139..160 CDD:275380
leucine-rich repeat 161..184 CDD:275380
LRR_8 183..244 CDD:290566
leucine-rich repeat 185..209 CDD:275380
LRR_4 209..247 CDD:289563
leucine-rich repeat 210..233 CDD:275380
leucine-rich repeat 234..259 CDD:275380
LRR_RI 250..492 CDD:238064
LRR_8 259..318 CDD:290566
leucine-rich repeat 260..283 CDD:275380
leucine-rich repeat 284..307 CDD:275380
leucine-rich repeat 308..359 CDD:275380
leucine-rich repeat 334..348 CDD:275378
LRR_8 358..418 CDD:290566
leucine-rich repeat 360..383 CDD:275380
leucine-rich repeat 384..407 CDD:275380
LRR_8 406..466 CDD:290566
leucine-rich repeat 408..431 CDD:275380
leucine-rich repeat 432..455 CDD:275380
LRR_RI 447..705 CDD:238064 32/135 (24%)
LRR_8 454..514 CDD:290566
leucine-rich repeat 456..476 CDD:275380
leucine-rich repeat 480..501 CDD:275380
leucine-rich repeat 505..517 CDD:275378
leucine-rich repeat 525..550 CDD:275380
LRR_8 549..609 CDD:290566 9/36 (25%)
leucine-rich repeat 551..574 CDD:275380 1/1 (100%)
leucine-rich repeat 575..598 CDD:275380 8/22 (36%)
leucine-rich repeat 599..622 CDD:275380 0/22 (0%)
LRR_8 622..681 CDD:290566 18/58 (31%)
leucine-rich repeat 623..646 CDD:275380 8/22 (36%)
LRR_RI 647..896 CDD:238064 65/252 (26%)
leucine-rich repeat 647..670 CDD:275380 9/22 (41%)
leucine-rich repeat 671..693 CDD:275380 2/21 (10%)
leucine-rich repeat 694..717 CDD:275380 4/25 (16%)
LRR_8 716..776 CDD:290566 22/59 (37%)
leucine-rich repeat 718..741 CDD:275380 8/22 (36%)
leucine-rich repeat 742..763 CDD:275380 7/20 (35%)
LRR_8 765..824 CDD:290566 21/59 (36%)
leucine-rich repeat 766..789 CDD:275380 11/23 (48%)
leucine-rich repeat 790..813 CDD:275380 4/22 (18%)
leucine-rich repeat 814..835 CDD:275380 6/20 (30%)
leucine-rich repeat 838..861 CDD:275380 3/22 (14%)
LRR_8 862..921 CDD:290566 13/58 (22%)
leucine-rich repeat 862..885 CDD:275380 4/22 (18%)
leucine-rich repeat 886..906 CDD:275380 6/19 (32%)
TPKR_C2 919..>946 CDD:301599 6/26 (23%)
trilXP_009292463.1 LRRNT 25..56 CDD:214470
leucine-rich repeat 60..83 CDD:275380 8/46 (17%)
LRR_8 84..142 CDD:290566 23/83 (28%)
LRR_4 84..123 CDD:289563 17/38 (45%)
leucine-rich repeat 84..107 CDD:275380 8/22 (36%)
leucine-rich repeat 108..131 CDD:275380 12/48 (25%)
leucine-rich repeat 132..155 CDD:275380 3/22 (14%)
LRR_8 155..213 CDD:290566 21/57 (37%)
LRR_RI 156..>358 CDD:238064 54/202 (27%)
leucine-rich repeat 156..179 CDD:275380 8/22 (36%)
leucine-rich repeat 180..203 CDD:275380 8/22 (36%)
leucine-rich repeat 204..228 CDD:275380 11/23 (48%)
leucine-rich repeat 229..252 CDD:275380 4/22 (18%)
leucine-rich repeat 253..276 CDD:275380 6/22 (27%)
LRR_8 259..311 CDD:290566 8/51 (16%)
leucine-rich repeat 277..298 CDD:275380 2/20 (10%)
LRR_8 300..358 CDD:290566 12/58 (21%)
leucine-rich repeat 301..324 CDD:275380 4/22 (18%)
leucine-rich repeat 325..348 CDD:275380 6/23 (26%)
FN3 546..614 CDD:214495 13/67 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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