DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment atk and 2mit

DIOPT Version :10

Sequence 1:NP_649228.1 Gene:atk / 40266 FlyBaseID:FBgn0036995 Length:1535 Species:Drosophila melanogaster
Sequence 2:NP_001262529.1 Gene:2mit / 41616 FlyBaseID:FBgn0260793 Length:1155 Species:Drosophila melanogaster


Alignment Length:1110 Identity:236/1110 - (21%)
Similarity:383/1110 - (34%) Gaps:331/1110 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   439 QNQFARVDSQLLAGLPSLRRLDLSENGLIELAPNSF---------RHNPLLETLNISSNELTKIH 494
            :.|.:|.|...|: ..|:.|:...||     .|:||         ||...|| ||..:|:|...|
  Fly    46 EQQLSRQDVGRLS-YQSIHRMLRDEN-----EPDSFRGELRYQQKRHKRELE-LNAPANKLNLTH 103

  Fly   495 ------SSTLIHLERLFEV----DASYNQLKSVIAGLPRIVERISLKGNQITSLP-AAASKDLQL 548
                  :||....:..|:|    |.|.|||:|:.......:.::.|..|.:..:| :.|..::.|
  Fly   104 RDLRTFNSTGGQWKGDFQVITAMDLSSNQLESLSLDNFNQLRQLDLGNNSLEVIPLSLADTNMSL 168

  Fly   549 PNLRMLDLSQNRIEQLPRHGF-QGAMELRVLSLAQNELRQLKDTSFIGIQRLELLHLQENQLGEA 612
            |.: .||||.|:..|:....| |...:|:.|:||.|||..:...||..:..|:.|.|..|.:.:.
  Fly   169 PFV-TLDLSCNKFSQISTSFFAQRLPQLKNLNLAHNELLNISRESFYNLLELQTLVLSHNNISDI 232

  Fly   613 DERALLPLAELRNLNLQSNKLEAITDNFFSNNSRLEQLDLSRNLIRSISPTAFDTQRSLEYLDLS 677
            |....|.|..|:.|:|..|:|.............|..|.::.|....::...|....||:.||.|
  Fly   233 DYETFLALPNLQYLDLSHNRLSGSAIRALQGIPDLVSLSIAYNPDVGVAMQEFVASWSLKELDAS 297

  Fly   678 GNALLDISVGLGNLNNLRDIDLSYNQISRIQSDVIGGWRNVVEIRLSNNLIVELQQGTFRNLPKL 742
            |..|..:...|.                          ::|..::||:|.:..:..|...:.|.|
  Fly   298 GTGLCQVPAALA--------------------------QSVRTLKLSDNWLKAINCGDMDSYPLL 336

  Fly   743 QYLDLSSNEIRNVEPGALKGLDELQEFVLADNKLVELKDHVFEELPSLLASHFQYNKLRYISPES 807
            ||||||.:.|..||..||..|:.|:...|..|.|:.:...:   .|||.....|:|::..:.|::
  Fly   337 QYLDLSHSRIAQVEDDALGRLELLESLFLDRNLLMRVPSSL---PPSLEHLFLQHNQIMELPPQA 398

  Fly   808 FHNANSLVFLNLSNNHFRNMENIGLRSMRNLEVLDLSTNGVKLVSTMPLKALNWLVELKMDNNQI 872
            |                     :||   .||:.||||.|  :|:...|| :|..|:.|.::::.:
  Fly   399 F---------------------VGL---VNLQTLDLSNN--RLIFLPPL-SLPKLLTLNLESSGV 436

  Fly   873 CRIQGSPFETMPRLRVLSMRNNQLRSIKERTFRNVRGNIAILDVDGNPIDCNCEMQWLSVWLQET 937
            ..:..|...|:|:||.|.:                         :.|||.|: ::..::.|    
  Fly   437 ESVSQSIVHTLPQLRDLLL-------------------------EDNPIKCS-DLLGIAEW---- 471

  Fly   938 NFPYPGPKCQDGRLLRSARMERSLCVGADIYGNERTDGNQLPLLNEHGDVFQRDLPDDFNDECEA 1002
                                 .|.|...|                                   |
  Fly   472 ---------------------ASPCRSVD-----------------------------------A 480

  Fly  1003 GEGTRLPGDRPLVGESEYFYDQYVDATEAPDTTHSAISTSQRPKPTPTINSNIDLNNTIL--HTK 1065
            |:..         |.|                                ::..:||....|  |..
  Fly   481 GQSN---------GAS--------------------------------VSGRVDLKTEYLQFHNF 504

  Fly  1066 YFN--------RKPQPGSGSPFTFFGYPLPSVSLGRFFGFGDRGRKQRTDSNDDMPATHR-MAHI 1121
            |.|        |||: ....|        ||.||              |.::..:..|.| |:.:
  Fly   505 YENFSSRECGIRKPE-NDTKP--------PSCSL--------------TRASATLTTTPRSMSKV 546

  Fly  1122 SLPSGRGKTRMYQPNSAEFEKYLKDQQKQEKLNI-ARNRYVDTDSTTSSMEDALSNESGSAATTV 1185
            .      |::..|..:...|.........||..| |.:....|.:.|::..:|::..:.|..|..
  Fly   547 E------KSQEAQATATSVEVAAATAATSEKTGIQATSAAQSTAAATTAEREAIATATSSDTTAT 605

  Fly  1186 GVFRTTFREPSSIERGGFRP-------IVPAHVGGFMPVHDPQQRRGLVEVVNITGNPSEIVQGI 1243
                .|....::|:..|..|       :.|........:...||..|:  ....|..|::.:..:
  Fly   606 ----PTLAAAAAIQSAGNIPAQLTTKTLRPTETTSLAQLQRRQQMPGM--PAKTTETPAKNLPSL 664

  Fly  1244 GQRKFIPISTQARP-KPTKSSGESSETATYEVTETTPDITTTTPLMQRIATSTTKASTTTTRSTT 1307
            .|.|    :|.|.| ..|:.:.    |||.|:....|  |..:...:.:|||..:.:|.......
  Fly   665 AQTK----ATTALPILATRDAA----TATTEINSDKP--TNISGATKTVATSAAEIATPPAIEVP 719

  Fly  1308 TTSTTQVTPAENNASSSTELDSQYDDEDLEAQSVT----------------LLRPPPL-----VQ 1351
            .|........:..|..:.|...:|...|...|..|                |:..|.|     |.
  Fly   720 QTILAGKKSDKMPADKAHETLLKYPTRDTSGQVATTPHKHATLQLHVKDRHLIGTPLLMHKGDVL 784

  Fly  1352 TTTAETILL-------------IPPAEEHVAQIKSRSWVTTTTPQSPSDNQVTLAGPTSTVPPPP 1403
            ...||.:||             :.|:::|.:..:.:....|...|:.:.|     |.|.:.....
  Fly   785 LVDAEQLLLPGTATVADADSEVLDPSQQHQSAEQEKHQSATDKRQADAIN-----GDTKSPAKGH 844

  Fly  1404 PASPPLRGGGRSTITKVYTPYQQQVAQPTAEEYQRT--TPSGDNEGV-----ASEHQLTANAQKR 1461
            ...|.|      :|.|:  .|..:.|..|.|:...|  ||...:..|     |:..:|:..||.:
  Fly   845 KKKPSL------SIKKM--TYSTKHAAKTVEDMAATSKTPQHQHSSVNTPKEAAPEELSTFAQLK 901

  Fly  1462 TELEL 1466
            ..:||
  Fly   902 AYVEL 906

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
atkNP_649228.1 leucine-rich repeat 886..906 CDD:275380 3/19 (16%)
PCC 891..>936 CDD:188093 5/44 (11%)
leucine-rich repeat 69..89 CDD:275380
leucine-rich repeat 90..113 CDD:275380
LRR 93..530 CDD:443914 30/109 (28%)
leucine-rich repeat 115..138 CDD:275380
leucine-rich repeat 139..160 CDD:275380
leucine-rich repeat 161..184 CDD:275380
leucine-rich repeat 185..209 CDD:275380
leucine-rich repeat 210..233 CDD:275380
leucine-rich repeat 234..259 CDD:275380
leucine-rich repeat 260..283 CDD:275380
leucine-rich repeat 284..307 CDD:275380
leucine-rich repeat 308..359 CDD:275380
leucine-rich repeat 334..348 CDD:275378
PLN00113 359..>824 CDD:215061 107/405 (26%)
leucine-rich repeat 360..383 CDD:275380
leucine-rich repeat 384..407 CDD:275380
leucine-rich repeat 408..431 CDD:275380
leucine-rich repeat 432..455 CDD:275380 4/15 (27%)
leucine-rich repeat 456..476 CDD:275380 6/28 (21%)
leucine-rich repeat 480..501 CDD:275380 9/26 (35%)
leucine-rich repeat 505..517 CDD:275378 7/15 (47%)
leucine-rich repeat 525..550 CDD:275380 5/25 (20%)
leucine-rich repeat 551..574 CDD:275380 8/23 (35%)
leucine-rich repeat 575..598 CDD:275380 9/22 (41%)
leucine-rich repeat 599..622 CDD:275380 7/22 (32%)
leucine-rich repeat 623..646 CDD:275380 5/22 (23%)
leucine-rich repeat 647..670 CDD:275380 4/22 (18%)
leucine-rich repeat 671..693 CDD:275380 7/21 (33%)
leucine-rich repeat 694..717 CDD:275380 0/22 (0%)
leucine-rich repeat 718..741 CDD:275380 5/22 (23%)
leucine-rich repeat 742..763 CDD:275380 12/20 (60%)
leucine-rich repeat 766..789 CDD:275380 4/22 (18%)
leucine-rich repeat 790..813 CDD:275380 5/22 (23%)
leucine-rich repeat 814..835 CDD:275380 2/20 (10%)
leucine-rich repeat 838..861 CDD:275380 10/22 (45%)
leucine-rich repeat 862..885 CDD:275380 4/22 (18%)
2mitNP_001262529.1 LRR <106..458 CDD:443914 108/433 (25%)
leucine-rich repeat 124..143 CDD:275380 6/18 (33%)
leucine-rich repeat 144..167 CDD:275380 4/22 (18%)
leucine-rich repeat 172..194 CDD:275380 8/21 (38%)
leucine-rich repeat 195..218 CDD:275380 9/22 (41%)
leucine-rich repeat 219..242 CDD:275380 7/22 (32%)
leucine-rich repeat 243..311 CDD:275380 17/93 (18%)
leucine-rich repeat 312..335 CDD:275380 5/22 (23%)
leucine-rich repeat 336..359 CDD:275380 13/22 (59%)
leucine-rich repeat 360..380 CDD:275380 4/22 (18%)
leucine-rich repeat 381..404 CDD:275380 7/46 (15%)
leucine-rich repeat 405..449 CDD:275380 14/46 (30%)
Blue background indicates that the domain is not in the aligned region.

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