DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment atk and tlr3

DIOPT Version :10

Sequence 1:NP_649228.1 Gene:atk / 40266 FlyBaseID:FBgn0036995 Length:1535 Species:Drosophila melanogaster
Sequence 2:NP_001013287.2 Gene:tlr3 / 403126 ZFINID:ZDB-GENE-040219-7 Length:903 Species:Danio rerio


Alignment Length:784 Identity:188/784 - (23%)
Similarity:313/784 - (39%) Gaps:217/784 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   209 SLKNLDLSHNGLNWIHLRALSRLPNLVSLKLSHNQISDVGMVGRIVKDLEHLKKLRLDNNLITVI 273
            ::..||:|||.|.  .|.:|....|||::..|:|.::  |:...:...|.||:.|.:.:|.:.:|
Zfish    55 NITTLDVSHNRLK--TLSSLHMYTNLVNIDASYNSLA--GIEKDLCLSLPHLQFLNVQHNQVYLI 115

  Fly   274 EDGSFVDLPNLSELHLNDNRITELQYGAFLRTPQLKTIYLQNNLIRRIHPESLLQASGSGVEAVH 338
            .:.:..:..:|::|.|:||::.                 ||.      .|.|||:          
Zfish   116 SEKNLKNCFHLTQLDLSDNKLK-----------------LQG------EPFSLLK---------- 147

  Fly   339 MYNNEIGHVEALRALLDALPRLRYLDMSGNLLSELPYGALRGHGTLEQLHLNHNHLRLIERDALM 403
                                .|.:||:|.|.|:....      ||..||                
Zfish   148 --------------------NLTWLDVSRNKLTSAKL------GTEPQL---------------- 170

  Fly   404 AMPALRELRMRNNSLSSDLPLPFWNLPGLKGLDLAQNQFARVDSQLLAGLPSLRRLDLSENGLIE 468
              |.|..|.:..|:::.                |.:|.|:     .|:...|.|.|.||...|.:
Zfish   171 --PNLVTLVLSGNNINI----------------LQENDFS-----FLSNSSSFRVLILSSLILKK 212

  Fly   469 LAPNSFRHNPLLETLNISSNELTKIHSSTLIHLERLFEVDASYNQLKSVIAGLPRIVERISLKGN 533
            :....|:....|..|.:.|::||...:::|  .|.|.:.                .:..:|||..
Zfish   213 VENGCFKAIDTLSDLVLDSSKLTSQFTTSL--FEELADT----------------ALRNLSLKST 259

  Fly   534 QITSLPAAASKDLQLPNLRMLDLSQNRIEQLPRHGFQGAMELRVLSLAQNELRQLKDTSFIGIQR 598
            :..:|.....:.|:...:.:||||:|||.::....||...:|..|||..|.:|.|.:.||.|:..
Zfish   260 EQVTLSNTTFQGLEKTKITVLDLSENRISKIVDGAFQWLPQLEFLSLEHNTIRHLTNDSFSGLGN 324

  Fly   599 LELLHLQE------NQLGEADERALLPLAELRNLNLQSNKLEAITDNFFSNNSRLEQLDLSRNL- 656
            |..|:|::      ..|...|:.:...|.:|..|.:.:.....:|:..||....|:.||||.:: 
Zfish   325 LRQLNLRKALIKSHASLPVIDDFSFQHLVQLEYLCMANTAFRELTEQIFSGLRNLKTLDLSWSIT 389

  Fly   657 -IRSISPTAF-DTQRS--LEYLDLSGNALLDISVG----LGNLNNLRDIDLSYNQIS-RIQSDVI 712
             |::::...| ..|.|  |:.|:|:|..:..:..|    ||||:||.   :|.|.|: ::|.:..
Zfish   390 GIKTVTNKTFAGLQESPLLQTLNLTGMGINKLEPGAFSSLGNLSNLL---MSRNFINQQLQGNEF 451

  Fly   713 GGWRNVVEIRLSNNL---------------------------IVELQQGTFRNLPKLQYLDLSSN 750
            .|..|:.||.:|.|.                           .::::...||.|..|..||||:|
Zfish   452 KGLSNIKEIDMSINQQSISLTNASFVHVSTLRTLKLGRALKGTLDMEPSPFRPLVNLTILDLSNN 516

  Fly   751 EIRNVEPGALKGLDELQEFVLADNKLVELKDHVFEELPSLLASHFQYNKLRYISPESFHNANSLV 815
            .|.|:....|:||..|        |:|:::                            ||     
Zfish   517 NIANINADLLEGLYNL--------KVVKMQ----------------------------HN----- 540

  Fly   816 FLNLSNNHFRNMENIG-----LRSMRNLEVLDLSTNGVKLVSTMPLKALNWLVELKMDNNQICRI 875
              ||:  ....|.|.|     |:...||..|:|..||:..:.....:..:.|.||.:..|.:.::
Zfish   541 --NLA--RLWKMANPGGPVLFLKDATNLSYLNLDYNGIDEIPPNAFRGFSELHELSLRGNLLDQL 601

  Fly   876 QGSPFETMPRLRVLSMRNNQLRSIKERTFRNVRGNIAILDVDGNPIDCNCE-MQWLSVWLQETNF 939
            ..|.|:.:..|:.|.::.|.:.|::..||......:..|::|.||.||.|| :.|.|.||..||.
Zfish   602 HASVFDDLNSLKYLHLQKNLITSVQRATFGVPLSKLKELNMDHNPFDCTCESILWFSEWLNSTNT 666

  Fly   940 PYPG 943
            ..||
Zfish   667 SVPG 670

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
atkNP_649228.1 leucine-rich repeat 886..906 CDD:275380 6/19 (32%)
PCC 891..>936 CDD:188093 16/45 (36%)
leucine-rich repeat 69..89 CDD:275380
leucine-rich repeat 90..113 CDD:275380
LRR 93..530 CDD:443914 64/320 (20%)
leucine-rich repeat 115..138 CDD:275380
leucine-rich repeat 139..160 CDD:275380
leucine-rich repeat 161..184 CDD:275380
leucine-rich repeat 185..209 CDD:275380 188/784 (24%)
leucine-rich repeat 210..233 CDD:275380 8/22 (36%)
leucine-rich repeat 234..259 CDD:275380 6/24 (25%)
leucine-rich repeat 260..283 CDD:275380 4/22 (18%)
leucine-rich repeat 284..307 CDD:275380 5/22 (23%)
leucine-rich repeat 308..359 CDD:275380 6/50 (12%)
leucine-rich repeat 334..348 CDD:275378 0/13 (0%)
PLN00113 359..>824 CDD:215061 119/507 (23%)
leucine-rich repeat 360..383 CDD:275380 6/22 (27%)
leucine-rich repeat 384..407 CDD:275380 2/22 (9%)
leucine-rich repeat 408..431 CDD:275380 3/22 (14%)
leucine-rich repeat 432..455 CDD:275380 4/22 (18%)
leucine-rich repeat 456..476 CDD:275380 6/19 (32%)
leucine-rich repeat 480..501 CDD:275380 6/20 (30%)
leucine-rich repeat 505..517 CDD:275378 0/11 (0%)
leucine-rich repeat 525..550 CDD:275380 5/24 (21%)
leucine-rich repeat 551..574 CDD:275380 9/22 (41%)
leucine-rich repeat 575..598 CDD:275380 10/22 (45%)
leucine-rich repeat 599..622 CDD:275380 6/28 (21%)
leucine-rich repeat 623..646 CDD:275380 5/22 (23%)
leucine-rich repeat 647..670 CDD:275380 8/25 (32%)
leucine-rich repeat 671..693 CDD:275380 9/25 (36%)
leucine-rich repeat 694..717 CDD:275380 6/23 (26%)
leucine-rich repeat 718..741 CDD:275380 7/49 (14%)
leucine-rich repeat 742..763 CDD:275380 9/20 (45%)
leucine-rich repeat 766..789 CDD:275380 3/22 (14%)
leucine-rich repeat 790..813 CDD:275380 2/22 (9%)
leucine-rich repeat 814..835 CDD:275380 6/25 (24%)
leucine-rich repeat 838..861 CDD:275380 5/22 (23%)
leucine-rich repeat 862..885 CDD:275380 6/22 (27%)
tlr3NP_001013287.2 LRR <54..436 CDD:443914 118/500 (24%)
leucine-rich repeat 57..77 CDD:275380 8/21 (38%)
leucine-rich repeat 78..101 CDD:275380 6/24 (25%)
leucine-rich repeat 102..125 CDD:275380 4/22 (18%)
leucine-rich repeat 126..148 CDD:275380 11/74 (15%)
leucine-rich repeat 149..172 CDD:275380 10/46 (22%)
leucine-rich repeat 173..276 CDD:275380 27/141 (19%)
leucine-rich repeat 278..300 CDD:275380 9/21 (43%)
leucine-rich repeat 301..324 CDD:275380 10/22 (45%)
leucine-rich repeat 325..354 CDD:275380 6/28 (21%)
leucine-rich repeat 355..378 CDD:275380 5/22 (23%)
LRR 368..>666 CDD:443914 89/345 (26%)
leucine-rich repeat 379..404 CDD:275380 7/24 (29%)
leucine-rich repeat 408..431 CDD:275380 6/22 (27%)
leucine-rich repeat 432..456 CDD:275380 8/26 (31%)
leucine-rich repeat 457..507 CDD:275380 7/49 (14%)
leucine-rich repeat 482..498 CDD:275380 0/15 (0%)
leucine-rich repeat 508..531 CDD:275380 11/22 (50%)
leucine-rich repeat 532..563 CDD:275380 11/75 (15%)
leucine-rich repeat 564..587 CDD:275380 5/22 (23%)
leucine-rich repeat 588..611 CDD:275380 6/22 (27%)
leucine-rich repeat 612..630 CDD:275380 4/17 (24%)
Tlr3_TMD 698..730 CDD:465595
TIR 756..898 CDD:214587
Blue background indicates that the domain is not in the aligned region.

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