DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment atk and caps

DIOPT Version :9

Sequence 1:NP_001262113.1 Gene:atk / 40266 FlyBaseID:FBgn0036995 Length:1535 Species:Drosophila melanogaster
Sequence 2:NP_001303391.1 Gene:caps / 39493 FlyBaseID:FBgn0023095 Length:811 Species:Drosophila melanogaster


Alignment Length:846 Identity:179/846 - (21%)
Similarity:296/846 - (34%) Gaps:221/846 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   538 LPAAASKDLQLPNLRMLDLSQNRIEQLPRHGFQGAMELRVLSLAQNELRQLKDTSFIGIQRLELL 602
            ||.|.:     |.::.|.:..|:::.:. ...|...:|..|.|:.|::..:.:.||....:|:.|
  Fly    66 LPIALN-----PAIQRLVIKNNKLKTID-SSMQFYAQLTFLDLSFNDMLTIPERSFAYHAKLQEL 124

  Fly   603 HLQENQLGEADERALLPLAELRNLNLQSNKLEAITDNFFSNNSRLEQLDLSRNLIRSISPTAFDT 667
            ||..|::|:...:..|.|:.:..|||:.|.:..:....||...:|.:|:|.:|.|..|.|.|.| 
  Fly   125 HLDHNKIGQVSNKTFLGLSTISVLNLRGNLIAELEYRTFSPMVKLAELNLGQNRISHIDPHALD- 188

  Fly   668 QRSLEYLDLSGNALLDISVGLGNLNNLRDIDLSYNQISRIQSDV-IGGWRNVVEIRLSNNLIVEL 731
                                  .|:|||.:.|..|.::.:..:: .....::.|:.|..|..:.:
  Fly   189 ----------------------GLDNLRVLYLDDNTLTTVPGELTFQALHSLAELYLGTNSFMTI 231

  Fly   732 QQGTFRNLPKLQYLDLSSNEIRNVEPGALKGLDELQEFVLADNKLVELKDHVFEELPSLLASHFQ 796
            ..|.|::|..|..|||....:.|:...|||||..|:...|:||:|..:....|:.|..|...:..
  Fly   232 PGGAFQDLKGLTRLDLRGAGLHNISGDALKGLVSLRFLDLSDNRLPAIPTAAFQRLGRLEQLNIG 296

  Fly   797 YNKLRYISPESFHNANSLVFLNLSN-NHFRNMENIGLRSMRNLEVLDLSTNGVKLVSTMPLKALN 860
            .|....||..:|.....|..|.|:. ...|.:|:.......|||.|:||:|          |.||
  Fly   297 QNDFEVISSGAFSGLRELRHLELTGAQRLRRVESGAFSGNTNLEHLNLSSN----------KQLN 351

  Fly   861 WLVELKMDNNQICRIQGSPFETMPRLRVLSMRNNQLRSIKERTFRNVRG-----NIAILDVDGNP 920
            .|..:.:..             :|.|..:.::.|||.|:.|       |     ::..||:..||
  Fly   352 ELSSIALGG-------------LPHLSTVVLKANQLSSLDE-------GLVPWADLQTLDLSENP 396

  Fly   921 IDCNCEMQWLSVWLQETNFPYPGPKCQDGRLLRSARMERSLCVGADIYGNERTDGNQLPLLNEHG 985
            .:|:|.:.||                            |.|.|      :....|...|::..:.
  Fly   397 FECDCRLLWL----------------------------RHLLV------SRNASGQYAPVICAYP 427

  Fly   986 DVFQRDLPDDFNDE----CEAGEGTRLPGDRPLVGESEYFYDQYVDATEAPDTT----------- 1035
            ... ||||.....|    |..|..::    :.::|       ..|.|..|..||           
  Fly   428 TAL-RDLPLAHLAEPLLGCAHGAASK----QAIIG-------ILVVACAALITTLALVLYTCRHR 480

  Fly  1036 -------HSAISTSQRPKPTPTINSNIDLNNTILHTKYFNRKPQPGSGSPFTFFGYP-------- 1085
                   |||:...:|           :...|....:|.:|.|..|.|......|||        
  Fly   481 IREMLKGHSALGRKER-----------EYQKTFSDEEYMSRPPPGGGGVHPAAGGYPYIAGNSRM 534

  Fly  1086 LPSVSL-----------GRFFGFG---DRGRKQ--RTDSNDDMPATH--RMAHISLPSGRGKTRM 1132
            :|...|           ||..|.|   ..|..|  :..|..|..:..  :::||...:..|:.:.
  Fly   535 IPVTELXLEAPPPPQLRGRGGGGGASTASGAVQQLQVPSAVDQASNSFAQLSHIHYMTNNGQQQQ 599

  Fly  1133 YQPNSAEFEKYLKDQQKQEKLNIARNRYVDTDSTTSS-------MEDALSNESGSAATTVGVFRT 1190
            .|...:..:.:   ..:|:...:|.|.....::|:..       .|..||:.|...|..:.:.:.
  Fly   600 AQQQQSTSKMH---HSQQDMRLLACNGGKPLNATSLPRHRPPVVQESTLSHYSQPLANGIRLTQD 661

  Fly  1191 TFREPSSIERGGFRPIVPAHVGG-FMPVHDPQQRRGLVEVVNITGNPSEIVQGIGQRKFIPISTQ 1254
            .|....:....       .|.|| :....|.....|.:.      |.|..        .:|:...
  Fly   662 HFNHNQNQSHN-------QHYGGVYAKPCDAMSEPGYIH------NNSHY--------SLPLDHD 705

  Fly  1255 ARPKPTKSSGESSETATYEVTETTPDITTTTPLMQRIATSTTKASTTTTRSTTTTSTTQVTPAEN 1319
            ..|.||.             |...|.:    ||...:..:....:||..||....:... |.:.|
  Fly   706 LPPSPTP-------------TPPPPAL----PLRNGVGMALIHGNTTGRRSFNNNNNVS-TLSNN 752

  Fly  1320 N 1320
            |
  Fly   753 N 753

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
atkNP_001262113.1 leucine-rich repeat 69..89 CDD:275380
leucine-rich repeat 90..113 CDD:275380
leucine-rich repeat 115..138 CDD:275380
leucine-rich repeat 139..160 CDD:275380
leucine-rich repeat 161..184 CDD:275380
LRR_8 183..244 CDD:290566
leucine-rich repeat 185..209 CDD:275380
LRR_4 209..247 CDD:289563
leucine-rich repeat 210..233 CDD:275380
leucine-rich repeat 234..259 CDD:275380
LRR_RI 250..492 CDD:238064
LRR_8 259..318 CDD:290566
leucine-rich repeat 260..283 CDD:275380
leucine-rich repeat 284..307 CDD:275380
leucine-rich repeat 308..359 CDD:275380
leucine-rich repeat 334..348 CDD:275378
LRR_8 358..418 CDD:290566
leucine-rich repeat 360..383 CDD:275380
leucine-rich repeat 384..407 CDD:275380
LRR_8 406..466 CDD:290566
leucine-rich repeat 408..431 CDD:275380
leucine-rich repeat 432..455 CDD:275380
LRR_RI 447..705 CDD:238064 42/166 (25%)
LRR_8 454..514 CDD:290566
leucine-rich repeat 456..476 CDD:275380
leucine-rich repeat 480..501 CDD:275380
leucine-rich repeat 505..517 CDD:275378
leucine-rich repeat 525..550 CDD:275380 3/11 (27%)
LRR_8 549..609 CDD:290566 15/59 (25%)
leucine-rich repeat 551..574 CDD:275380 3/22 (14%)
leucine-rich repeat 575..598 CDD:275380 6/22 (27%)
leucine-rich repeat 599..622 CDD:275380 8/22 (36%)
LRR_8 622..681 CDD:290566 15/58 (26%)
leucine-rich repeat 623..646 CDD:275380 6/22 (27%)
LRR_RI 647..896 CDD:238064 62/250 (25%)
leucine-rich repeat 647..670 CDD:275380 9/22 (41%)
leucine-rich repeat 671..693 CDD:275380 1/21 (5%)
leucine-rich repeat 694..717 CDD:275380 4/23 (17%)
LRR_8 716..776 CDD:290566 20/59 (34%)
leucine-rich repeat 718..741 CDD:275380 6/22 (27%)
leucine-rich repeat 742..763 CDD:275380 8/20 (40%)
LRR_8 765..824 CDD:290566 15/59 (25%)
leucine-rich repeat 766..789 CDD:275380 7/22 (32%)
leucine-rich repeat 790..813 CDD:275380 5/22 (23%)
leucine-rich repeat 814..835 CDD:275380 5/21 (24%)
leucine-rich repeat 838..861 CDD:275380 8/22 (36%)
LRR_8 862..921 CDD:290566 12/63 (19%)
leucine-rich repeat 862..885 CDD:275380 1/22 (5%)
leucine-rich repeat 886..906 CDD:275380 6/19 (32%)
TPKR_C2 919..>946 CDD:301599 6/26 (23%)
capsNP_001303391.1 leucine-rich repeat 75..96 CDD:275380 3/21 (14%)
LRR_8 96..155 CDD:290566 18/58 (31%)
leucine-rich repeat 97..120 CDD:275380 6/22 (27%)
leucine-rich repeat 121..144 CDD:275380 8/22 (36%)
LRR_8 143..201 CDD:290566 20/80 (25%)
leucine-rich repeat 145..168 CDD:275380 6/22 (27%)
LRR_RI 147..397 CDD:238064 76/302 (25%)
leucine-rich repeat 169..192 CDD:275380 10/45 (22%)
leucine-rich repeat 193..217 CDD:275380 4/23 (17%)
LRR_8 217..276 CDD:290566 20/58 (34%)
leucine-rich repeat 218..241 CDD:275380 6/22 (27%)
leucine-rich repeat 242..265 CDD:275380 10/22 (45%)
LRR_8 265..321 CDD:290566 15/55 (27%)
leucine-rich repeat 266..289 CDD:275380 7/22 (32%)
leucine-rich repeat 290..313 CDD:275380 5/22 (23%)
LRR_8 312..374 CDD:290566 19/84 (23%)
leucine-rich repeat 314..335 CDD:275380 5/20 (25%)
leucine-rich repeat 339..363 CDD:275380 10/46 (22%)
LRRCT 395..445 CDD:214507 16/84 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR45617
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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