DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment atk and Tlr3

DIOPT Version :10

Sequence 1:NP_649228.1 Gene:atk / 40266 FlyBaseID:FBgn0036995 Length:1535 Species:Drosophila melanogaster
Sequence 2:NP_942086.2 Gene:Tlr3 / 364594 RGDID:735171 Length:905 Species:Rattus norvegicus


Alignment Length:794 Identity:210/794 - (26%)
Similarity:328/794 - (41%) Gaps:190/794 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   204 FDGLISLKNLDLSHNGLNWIHLRALSRLPNLVSLKLSHNQISDVGMVGRIVKDLEHLKKLRLDNN 268
            |.||:||           ||         .:||   |.||.:    |...|.|..|||       
  Rat    12 FGGLLSL-----------WI---------LVVS---STNQCT----VRYNVADCSHLK------- 42

  Fly   269 LITVIEDGSFVDLP-NLSELHLNDNRITELQYGAFLRTPQLKTIYLQNNLIRRIHPESLLQASGS 332
             :|.|.|    ||| |::.|:|..|::..|....|.|..||..:....|.|.::.||        
  Rat    43 -LTHIPD----DLPSNITVLNLTHNQLRGLPPANFTRYSQLALLDAGFNSISKLEPE-------- 94

  Fly   333 GVEAVHMYNNEIGHVEALRALLDALPRLRYLDMSGNLLSELPYGALRGHGTLEQLHLNHNHLRLI 397
                                |...||.|:.|::..|.||::..........|.:|||..|.:|.|
  Rat    95 --------------------LCQILPLLKVLNLQHNELSQISDQTFAFCTNLTELHLMSNSIRKI 139

  Fly   398 ERDALMAMPALRELRMRNNSLSSDLPLPFWNLPGLKGLDLAQNQFARVDSQLL--AGLPSLRRLD 460
            :.:......:|.:|.:..|.|||........|..|:.|.||:|:...:.|:.|  .|..||::||
  Rat   140 KSNPFKNQKSLIKLDLSRNGLSSTKLGTGVQLENLQELLLAKNKIFALRSEELDFLGNSSLQKLD 204

  Fly   461 LSENGLIELAPNSFR---------------------------HNPLLETLNISSNELTKIHSSTL 498
            ||.|.|.|.:|..|.                           .|..::.|::::|:|....:||.
  Rat   205 LSSNPLKEFSPGCFHAIGKLFVLLLNNAQLNLNLTEKLCWELSNTSIQNLSLANNQLLATSNSTF 269

  Fly   499 IHLER--LFEVDASYNQLKSVIAGLPRIVERISLKGNQITSLPAAASKDLQLPNLRMLDLSQNRI 561
            ..|::  |..:|.|||.|:.|              ||...|         .||:|:.|.|..|.|
  Rat   270 SGLKQTNLTSLDLSYNSLRYV--------------GNDAFS---------WLPHLKYLSLEYNNI 311

  Fly   562 EQLPRHGFQGAMELRVLSLAQNELRQ---------LKDTSFIGIQRLELLHLQENQLGEADERAL 617
            :.|..|.|:|...||.|||.:...:|         :.|.||..::.||.|::.:|.:........
  Rat   312 QSLTPHSFRGLSNLRYLSLKRAFTKQSVALASHPNIDDFSFQWLKCLEHLNMDDNTIPGIKSNTF 376

  Fly   618 LPLAELRNLNLQS--NKLEAITDNFFSN--NSRLEQLDLSRNLIRSISPTAFDTQRSLEYLDLSG 678
            ..|..|:.|:|..  ..|:.:|:..|.:  :|.|..|:|::|.|..|:...|..           
  Rat   377 TGLVSLKYLSLSKTFTGLQTLTNETFVSLTHSPLLTLNLTKNHISKIASGTFSW----------- 430

  Fly   679 NALLDISVGLGNLNNLRDIDLSYNQISRIQSDVIG-GWR---NVVEIRLSNNLIVELQQGTFRNL 739
                        |..||.:||..|:   |:.::.| .||   |:.||.||.|..::|...:|..:
  Rat   431 ------------LGQLRILDLGLNE---IEQELTGQEWRGLGNIFEIYLSYNKYLQLTSKSFTLV 480

  Fly   740 PKLQYLDLSSNEIRNVE--PGALKGLDELQEFVLADNKLVELKDHVFEELPSLLASHFQYNKLRY 802
            |.||.|.|....:::|:  |...:.|..|....|::|.:..|.:.:.|.|.:|....||:|.|..
  Rat   481 PSLQRLMLRRVALKSVDISPSPFRPLYNLTILDLSNNNIANLNEDLLEGLENLEILDFQHNNLAR 545

  Fly   803 ISPESFHNANSLVFLNLSNNHFRNMENIGLRSMRNLEVLDLSTNGVKLVSTMPLKALNWLVELKM 867
            :    :.:||....:|.            |:.:.:|.:|:|.:||   :..:|:|....|.|||.
  Rat   546 L----WKHANPGGPVNF------------LKGLSHLHILNLESNG---LDEIPVKVFKNLFELKS 591

  Fly   868 DN---NQICRIQGSPFETMPRLRVLSMRNNQLRSIKERTFRNVRGNIAILDVDGNPIDCNCE-MQ 928
            .|   |.:..:..|.|:....||.|:::.|.:.|:::..|.....|:..||:..||.||.|| :.
  Rat   592 INLGLNNLNTLLPSIFDDQTSLRSLNLQKNLITSVEKSVFGPAFHNLNSLDMSFNPFDCTCESIA 656

  Fly   929 WLSVWLQETNFPYP 942
            |...||.:|:...|
  Rat   657 WFVTWLNQTHTNIP 670

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
atkNP_649228.1 leucine-rich repeat 886..906 CDD:275380 6/19 (32%)
PCC 891..>936 CDD:188093 15/45 (33%)
leucine-rich repeat 69..89 CDD:275380
leucine-rich repeat 90..113 CDD:275380
LRR 93..530 CDD:443914 92/357 (26%)
leucine-rich repeat 115..138 CDD:275380
leucine-rich repeat 139..160 CDD:275380
leucine-rich repeat 161..184 CDD:275380
leucine-rich repeat 185..209 CDD:275380 3/4 (75%)
leucine-rich repeat 210..233 CDD:275380 3/22 (14%)
leucine-rich repeat 234..259 CDD:275380 8/24 (33%)
leucine-rich repeat 260..283 CDD:275380 8/23 (35%)
leucine-rich repeat 284..307 CDD:275380 6/22 (27%)
leucine-rich repeat 308..359 CDD:275380 7/50 (14%)
leucine-rich repeat 334..348 CDD:275378 0/13 (0%)
PLN00113 359..>824 CDD:215061 134/514 (26%)
leucine-rich repeat 360..383 CDD:275380 5/22 (23%)
leucine-rich repeat 384..407 CDD:275380 7/22 (32%)
leucine-rich repeat 408..431 CDD:275380 7/22 (32%)
leucine-rich repeat 432..455 CDD:275380 8/24 (33%)
leucine-rich repeat 456..476 CDD:275380 10/46 (22%)
leucine-rich repeat 480..501 CDD:275380 5/20 (25%)
leucine-rich repeat 505..517 CDD:275378 5/11 (45%)
leucine-rich repeat 525..550 CDD:275380 4/24 (17%)
leucine-rich repeat 551..574 CDD:275380 9/22 (41%)
leucine-rich repeat 575..598 CDD:275380 9/31 (29%)
leucine-rich repeat 599..622 CDD:275380 5/22 (23%)
leucine-rich repeat 623..646 CDD:275380 6/26 (23%)
leucine-rich repeat 647..670 CDD:275380 7/22 (32%)
leucine-rich repeat 671..693 CDD:275380 1/21 (5%)
leucine-rich repeat 694..717 CDD:275380 9/26 (35%)
leucine-rich repeat 718..741 CDD:275380 7/22 (32%)
leucine-rich repeat 742..763 CDD:275380 6/22 (27%)
leucine-rich repeat 766..789 CDD:275380 6/22 (27%)
leucine-rich repeat 790..813 CDD:275380 6/22 (27%)
leucine-rich repeat 814..835 CDD:275380 2/20 (10%)
leucine-rich repeat 838..861 CDD:275380 7/22 (32%)
leucine-rich repeat 862..885 CDD:275380 8/25 (32%)
Tlr3NP_942086.2 leucine-rich repeat 37..53 CDD:275380 10/27 (37%)
leucine-rich repeat 54..77 CDD:275380 6/22 (27%)
PLN00113 66..>646 CDD:215061 171/675 (25%)
leucine-rich repeat 78..101 CDD:275380 7/50 (14%)
leucine-rich repeat 102..125 CDD:275380 5/22 (23%)
leucine-rich repeat 126..149 CDD:275380 7/22 (32%)
leucine-rich repeat 150..199 CDD:275380 15/48 (31%)
leucine-rich repeat 200..250 CDD:275380 11/49 (22%)
leucine-rich repeat 251..276 CDD:275380 6/24 (25%)
leucine-rich repeat 277..300 CDD:275380 11/45 (24%)
leucine-rich repeat 301..322 CDD:275380 8/20 (40%)
leucine-rich repeat 325..381 CDD:275380 14/55 (25%)
leucine-rich repeat 382..407 CDD:275380 6/24 (25%)
leucine-rich repeat 410..433 CDD:275380 8/45 (18%)
leucine-rich repeat 434..458 CDD:275380 9/26 (35%)
leucine-rich repeat 459..482 CDD:275380 7/22 (32%)
leucine-rich repeat 483..508 CDD:275380 7/24 (29%)
leucine-rich repeat 509..532 CDD:275380 6/22 (27%)
leucine-rich repeat 533..564 CDD:275380 9/46 (20%)
leucine-rich repeat 565..586 CDD:275380 7/23 (30%)
leucine-rich repeat 589..612 CDD:275380 6/22 (27%)
leucine-rich repeat 613..631 CDD:275380 5/17 (29%)
LRRCT 646..698 CDD:214507 11/25 (44%)
Tlr3_TMD 699..731 CDD:465595
TIR 756..901 CDD:214587
Blue background indicates that the domain is not in the aligned region.

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