DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment atk and CG42346

DIOPT Version :10

Sequence 1:NP_649228.1 Gene:atk / 40266 FlyBaseID:FBgn0036995 Length:1535 Species:Drosophila melanogaster
Sequence 2:NP_001036303.2 Gene:CG42346 / 3355160 FlyBaseID:FBgn0259677 Length:1817 Species:Drosophila melanogaster


Alignment Length:1574 Identity:361/1574 - (22%)
Similarity:588/1574 - (37%) Gaps:401/1574 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 SHSNLPQIMDGLKAVERNIKGRIDELVLENNQLPALPGR-------------------------F 84
            |||:|..:.|...   ||::..::.|.:.|.:|..:|.|                         |
  Fly   308 SHSHLEALKDNSL---RNVRSSLESLSIVNGKLTQMPSRALSSMQKLTALDFDYNEIVRVDDYSF 369

  Fly    85 FGSLQIVRLMLRHNSIERVSNGWLNELENGLVEIFVVEPQLRSIPAESLNGMINMLAITIQSEEL 149
            :| |:|.:|.::.|.::.:.......||..:.||.|.|..||:.|..:|..:.::..:.:.:   
  Fly   370 YG-LRISKLNMKGNRLQGMPEHAFAGLEECMQEIDVSENGLRTFPLMALRKLDHLRILRLSN--- 430

  Fly   150 KHLPDFSGLLSL-----TYLSVQTGALQELPSHLFRHLPKLQHIHITGGSGLTRLEAGLFDGLIS 209
            ..:|.|.|.:.|     :..:...||.| |||.:|..|...|         ...:....|.....
  Fly   431 NRIPTFYGDIQLATNNASAAAAAVGAFQ-LPSLIFLDLSSNQ---------FAEIGPDCFRAFPQ 485

  Fly   210 LKNLDLSHNGLNWIHLRALSRLPNLVSLKLSHNQISDVGMVGRIVKDLEHLKKLRLDNNLITVIE 274
            ||.|....|.:..:...|...|..|:||.:|||:|  :|:..::.:..:.|:.:.|.:|.|..| 
  Fly   486 LKTLSFYANQIELVQPEAFKSLRELMSLDMSHNRI--IGLDPKVFEKNKRLQTVDLSHNHIHTI- 547

  Fly   275 DGSFVDLPNLSELHLNDNRITELQYGAFLRTPQLKTIYLQNNLIRRIHPE--SLLQASGSGVEAV 337
            .|.|.:||.|.|:.|::|.|.||...||..:..:..|||::|.|..|.|.  |.|      |...
  Fly   548 GGVFSNLPQLREVFLSENNILELPADAFTNSTNVDVIYLESNAIAHIDPNVFSTL------VNLD 606

  Fly   338 HMY--NNEIGHVEALRALLDALPRLRYLDMSGNLLSELPYGALRGHGTLEQLHLNHNHLRLIERD 400
            |:|  :|.|..:..  .|.|...:|..|.:..|.:.:|..|..|....|.::.|::|.:|.:.|.
  Fly   607 HLYLRSNFIPLLPV--TLFDKSTKLTSLSLDNNEIQDLEIGMFRKLEHLREVRLHNNRIRRVRRG 669

  Fly   401 ALMAMPALRELRMRNNSLSSDLPLPFWNLPGLKGLDLAQNQFARVDSQLLAGLPSLRRLDLSENG 465
            ....:|:|:||.::.||:....|..|..|..::.::|..||...::........||..:.|..|.
  Fly   670 VFEPLPSLQELHIQKNSIEDIEPQAFHTLENMQHINLQDNQLTVLEDIFPDENSSLLSVQLEANY 734

  Fly   466 LIELAPNSFRH------------------------NPLLETLNISSNELTKIHSSTLIHLERLFE 506
            |.::.|.:|..                        .|.|..|.:|.|::..|...|.::|..|..
  Fly   735 LHKVHPRTFSRQQKVQIMWLKDNQLTRVERSFFADTPQLGRLYLSDNKIRDIEKDTFVNLLLLQF 799

  Fly   507 VDASYNQLKSV----IAGLPRIVERISLKGNQITSLPAAASKDLQLPNLRMLDLSQNRIEQLPRH 567
            :|.|.|||:.:    .|.| :.:|.:||..|.|.::...|.  .:|.||:.||||.|.:.||.|.
  Fly   800 LDLSGNQLRQLRRDYFAPL-QDLEELSLARNHIEAIEGYAF--AKLKNLKSLDLSHNPLVQLTRD 861

  Fly   568 GFQGAMELRVLSLAQNELRQLKDTSFIGIQRLELLHLQENQLGEAD---------ERALLP---- 619
            .|.....|..|:|....||:|:..:|..:..|..|:|:.|||..||         .|.||.    
  Fly   862 IFSNEFPLNSLNLGNCSLRKLEQHAFKSLTNLNELNLERNQLNPADIQTLDIPNLRRLLLSHNNF 926

  Fly   620 ---------------LAELRNLNLQSNKLEAITDNFFSNNSRLEQLDLSRNLIRSISPTAFDTQR 669
                           |..|:.|::.:..|..|.|..|:.|:.|.:|||..|.:..|:...|....
  Fly   927 SYAGSVGIMAGMLDRLRSLQQLSMSNCSLGQIPDLLFAKNTNLVRLDLCDNRLTQINRNIFSGLN 991

  Fly   670 SLEYLDLSGNALLDI-SVGLGNLNNLRDIDLSYNQISRIQSDVIGGWRNVVEIRLSNNLIVELQQ 733
            ..:.|.|..|.|.|. .:.|.||:.|..:||:.||::.|....:.|..|:.::.|.:|.|..|..
  Fly   992 VFKELRLCRNELSDFPHIALYNLSTLESLDLARNQLASIDFFKLSGTLNLRQLILRDNKITALSG 1056

  Fly   734 GTFRNLPKLQYLDLSSNEIRNVEPGALKGLDELQEFVLADNKLVEL------------------- 779
            ....||.:|..:|||.|.:.::....|:....||:..|::|:.:::                   
  Fly  1057 FNAVNLTQLDSVDLSGNLLLSLPANFLRHSINLQKVHLSNNRFLQIPSSALSDVSIPRLSWLNLT 1121

  Fly   780 ---------------------------------KDHVFEELPSLLASHFQYNKLRYISPESFHNA 811
                                             ||  ||...:|...|...|::..|||.:|.:.
  Fly  1122 GNPINRIYTVKEERYPYLKELYICQTNLSILTSKD--FEAFQALQHLHLVNNRITRISPGAFKSL 1184

  Fly   812 NSLV------------------------FLNLSNNHFRNMENIGLRSMRNLEVLDLSTNGVKLVS 852
            .:|:                        |||:|:|..:::|...: .:..::.||||.|.:..:|
  Fly  1185 TNLLTLDLSVNELEMLPKERLQGLRLLRFLNISHNTLKDLEEFSV-DLLEMQTLDLSFNQLDRIS 1248

  Fly   853 TMPLKALNWLVELKMDNNQICRIQGSPFETMPRLRVLSMRNNQLRSIKERTFRNVRGNIAILDVD 917
            ....:.|:.|:||.:..|::..:....|..:.:|.||.:|.|....:.....|.:..|:..|.::
  Fly  1249 KKTFRNLHGLLELFLMGNRMTVLSNDAFRFLRKLHVLDLRKNYFELVPLEPLRPLETNLRTLRLE 1313

  Fly   918 GNPIDCNCEMQWLSVWLQETNFPYPGPKCQDGRLLRSARMERSLCVGADIYGNER--------TD 974
            .||:.|:|:.|.|..||::                   ..:.||.:|:   |..|        ..
  Fly  1314 ENPLHCSCDAQKLWEWLRD-------------------HRKWSLSMGS---GAGRGIGGLTGGLG 1356

  Fly   975 GNQLPLLN-EH-----GDVFQRDLPDDFNDECEA------------------------------- 1002
            |:.:..|. ||     |.||.|..|..|   |:|                               
  Fly  1357 GDSINYLRCEHPTELRGKVFGRMEPQQF---CDAPLIPKMAIQDIQPYSVVVSWQSRDHLGLNGF 1418

  Fly  1003 -------GEGTRLPGDRPLVGESEYFYDQYVDATEAPDTTHSAISTSQ-----RPKPTPTINSNI 1055
                   |:|....|. |...|.:...|  :...|...|...|...|:     |.:.....:...
  Fly  1419 EIVYHATGDGLVTAGS-PTSRERDSLRD--IHDPERQRTRDQARERSRERDRDRERDRERFSIAT 1480

  Fly  1056 D------LNNTILHTKYFNRKPQP-------GSGSPFTFFGYPLPSVSLGRFFGFGDRGRKQRTD 1107
            |      ||.|...||.....|..       |||:   :...||.:.             .||..
  Fly  1481 DEIHGKRLNGTASSTKLTKLSPNTRYHICVIGSGN---WLSEPLANA-------------LQRLH 1529

  Fly  1108 SNDDM-----------------PATHRMAHISLPSGRGKTRMYQPNSAEFEKYLKDQQKQEKLNI 1155
            :|:.:                 |..|:  |....:|.....|.|           |..|::..:.
  Fly  1530 TNESLREEEAVMMSAPLPESFSPYQHQ--HNRNSNGNANPAMVQ-----------DHNKKQNPDQ 1581

  Fly  1156 ARNRYVDTDSTTSSMEDALSNESGSAATTVGVFRTTFREPSSI--ERGGFRPIVPAHVGGFMPVH 1218
            ..:..|..|   :::.:.|.|...||.|.|....:|   ||.:  |.|       ....||  :|
  Fly  1582 DLDNVVGQD---NALMEVLKNSHISACTDVQTLDST---PSLVTDENG-------LSSNGF--IH 1631

  Fly  1219 DPQQRR---------GLVEVVNITGNPSEIVQGIGQRKFIPISTQARPKPTKSSGESSETATYEV 1274
            ....||         |::..:.:....|.:  .:.:::......||...|...|.........|:
  Fly  1632 SILTRRLGLIVGCCLGIIVFIVMISVLSYV--KLKKKRIENAKRQAALPPEYISYRHFSIPNEEL 1694

  Fly  1275 TETTPDITT--------------------TTPLMQRIAT------STTKAST--TTTRSTTTTST 1311
            |.|..:..|                    ::|.|..:.:      |.|..||  |.|.|||||:|
  Fly  1695 TRTAANAGTVAAAAAANNSHNSNNSTDEGSSPHMSSVPSGISAHISGTSLSTGGTGTGSTTTTAT 1759

  Fly  1312 TQVTPAENNASSST 1325
            |.:.......:.||
  Fly  1760 TPIGGVPLGKAGST 1773

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
atkNP_649228.1 leucine-rich repeat 886..906 CDD:275380 5/19 (26%)
PCC 891..>936 CDD:188093 13/44 (30%)
leucine-rich repeat 69..89 CDD:275380 7/44 (16%)
leucine-rich repeat 90..113 CDD:275380 4/22 (18%)
LRR 93..530 CDD:443914 121/473 (26%)
leucine-rich repeat 115..138 CDD:275380 8/22 (36%)
leucine-rich repeat 139..160 CDD:275380 3/20 (15%)
leucine-rich repeat 161..184 CDD:275380 9/27 (33%)
leucine-rich repeat 185..209 CDD:275380 2/23 (9%)
leucine-rich repeat 210..233 CDD:275380 6/22 (27%)
leucine-rich repeat 234..259 CDD:275380 8/24 (33%)
leucine-rich repeat 260..283 CDD:275380 8/22 (36%)
leucine-rich repeat 284..307 CDD:275380 9/22 (41%)
leucine-rich repeat 308..359 CDD:275380 16/54 (30%)
leucine-rich repeat 334..348 CDD:275378 5/15 (33%)
PLN00113 359..>824 CDD:215061 146/597 (24%)
leucine-rich repeat 360..383 CDD:275380 6/22 (27%)
leucine-rich repeat 384..407 CDD:275380 5/22 (23%)
leucine-rich repeat 408..431 CDD:275380 8/22 (36%)
leucine-rich repeat 432..455 CDD:275380 3/22 (14%)
leucine-rich repeat 456..476 CDD:275380 6/19 (32%)
leucine-rich repeat 480..501 CDD:275380 6/20 (30%)
leucine-rich repeat 505..517 CDD:275378 5/11 (45%)
leucine-rich repeat 525..550 CDD:275380 7/24 (29%)
leucine-rich repeat 551..574 CDD:275380 10/22 (45%)
leucine-rich repeat 575..598 CDD:275380 7/22 (32%)
leucine-rich repeat 599..622 CDD:275380 12/50 (24%)
leucine-rich repeat 623..646 CDD:275380 7/22 (32%)
leucine-rich repeat 647..670 CDD:275380 7/22 (32%)
leucine-rich repeat 671..693 CDD:275380 8/22 (36%)
leucine-rich repeat 694..717 CDD:275380 7/22 (32%)
leucine-rich repeat 718..741 CDD:275380 6/22 (27%)
leucine-rich repeat 742..763 CDD:275380 6/20 (30%)
leucine-rich repeat 766..789 CDD:275380 8/74 (11%)
leucine-rich repeat 790..813 CDD:275380 7/22 (32%)
leucine-rich repeat 814..835 CDD:275380 7/44 (16%)
leucine-rich repeat 838..861 CDD:275380 7/22 (32%)
leucine-rich repeat 862..885 CDD:275380 5/22 (23%)
CG42346NP_001036303.2 LRR <301..606 CDD:443914 84/323 (26%)
leucine-rich repeat 303..325 CDD:275380 7/19 (37%)
leucine-rich repeat 327..350 CDD:275380 5/22 (23%)
leucine-rich repeat 351..461 CDD:275380 24/114 (21%)
leucine-rich repeat 399..422 CDD:275380 8/22 (36%)
leucine-rich repeat 462..485 CDD:275380 4/31 (13%)
LRR 486..>736 CDD:443914 75/260 (29%)
leucine-rich repeat 486..509 CDD:275380 6/22 (27%)
leucine-rich repeat 510..533 CDD:275380 8/24 (33%)
leucine-rich repeat 534..556 CDD:275380 8/22 (36%)
leucine-rich repeat 557..580 CDD:275380 9/22 (41%)
leucine-rich repeat 581..604 CDD:275380 9/28 (32%)
leucine-rich repeat 605..628 CDD:275380 6/24 (25%)
PPP1R42 627..860 CDD:455733 62/235 (26%)
leucine-rich repeat 629..652 CDD:275380 6/22 (27%)
leucine-rich repeat 653..676 CDD:275380 5/22 (23%)
leucine-rich repeat 677..700 CDD:275380 8/22 (36%)
leucine-rich repeat 701..748 CDD:275380 10/46 (22%)
leucine-rich repeat 725..736 CDD:275378 3/10 (30%)
leucine-rich repeat 749..772 CDD:275380 0/22 (0%)
leucine-rich repeat 773..793 CDD:275380 6/19 (32%)
leucine-rich repeat 821..844 CDD:275380 7/24 (29%)
leucine-rich repeat 845..868 CDD:275380 10/22 (45%)
LRR 869..1226 CDD:443914 82/358 (23%)
leucine-rich repeat 869..892 CDD:275380 7/22 (32%)
leucine-rich repeat 893..915 CDD:275380 8/21 (38%)
leucine-rich repeat 916..944 CDD:275380 4/27 (15%)
leucine-rich repeat 945..968 CDD:275380 7/22 (32%)
leucine-rich repeat 969..992 CDD:275380 7/22 (32%)
leucine-rich repeat 993..1014 CDD:275380 6/20 (30%)
leucine-rich repeat 1017..1040 CDD:275380 7/22 (32%)
leucine-rich repeat 1041..1064 CDD:275380 6/22 (27%)
leucine-rich repeat 1089..1114 CDD:275380 4/24 (17%)
leucine-rich repeat 1115..1162 CDD:275380 4/48 (8%)
PPP1R42 1155..1317 CDD:455733 39/164 (24%)
leucine-rich repeat 1163..1186 CDD:275380 7/22 (32%)
leucine-rich repeat 1187..1210 CDD:275380 1/22 (5%)
leucine-rich repeat 1211..1233 CDD:275380 6/22 (27%)
leucine-rich repeat 1234..1257 CDD:275380 7/22 (32%)
leucine-rich repeat 1258..1279 CDD:275380 5/20 (25%)
leucine-rich repeat 1282..1306 CDD:275380 6/23 (26%)

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