DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment atk and lron-5

DIOPT Version :10

Sequence 1:NP_649228.1 Gene:atk / 40266 FlyBaseID:FBgn0036995 Length:1535 Species:Drosophila melanogaster
Sequence 2:NP_497943.2 Gene:lron-5 / 184307 WormBaseID:WBGene00008656 Length:656 Species:Caenorhabditis elegans


Alignment Length:606 Identity:156/606 - (25%)
Similarity:241/606 - (39%) Gaps:171/606 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   370 LSELPYGALRGHGTLEQLHLNHNHLRLIERDALMAMPALRELRMRNNSLSSDLPLPFWNLPGLKG 434
            :|.||        |:.||||  |.|.|.:....:..|.||.|||....:.......|..||||:.
 Worm    45 VSMLP--------TIRQLHL--NSLNLPQPPHFLFHPNLRVLRMSRCGMHEIPGSTFLPLPGLEV 99

  Fly   435 LDLAQNQFARVDSQLLAGLPSLRRLDLSENGLIELAPNSFRHNP--LLETLNISSNELTKIHSST 497
            :||:.|....:...:|..|..||.|.||.|.|..|...::...|  :||.|::|.|.:....|.|
 Worm   100 IDLSNNHLETLPPTVLRSLKFLRVLILSNNRLSNLDQLTWILAPGVVLEQLDLSGNPIAIATSMT 164

  Fly   498 LI-HLERLFEVDA---SYNQLKSVIAGLP--------RIVERISLKGNQITSLPAAASKDLQL-- 548
            :. .:.:||..|.   |.|:...:...||        |.:...:|..:.||::..::::||::  
 Worm   165 VFPPVRQLFLSDTRMESVNETAIMFKKLPGKCDRDVCRHIPIHNLNVSIITTIDFSSNRDLEIDS 229

  Fly   549 ------PNLRMLDLSQNRIEQLPRHGFQGAME----LRVLSLAQNELRQLKDT------------ 591
                  .|...:|||..|:..    ||:..:|    ::.|:::..:|...:||            
 Worm   230 GALDVFSNATYVDLSNTRLPV----GFEEWLERKSRVKSLNISHCQLPLHEDTWTACGQFLHSLD 290

  Fly   592 -SFIGIQRL----------------------------ELLHLQENQLGEADERALLPL----AEL 623
             |.||.:||                            |.|||:.|...|      .|:    .||
 Worm   291 ISGIGAKRLRFSRFCPIRSVFARDNLISSVYIDAVSMESLHLERNMFSE------FPIPPPGVEL 349

  Fly   624 RNLNLQSNKLEAITDNFFSNNSRLEQLDLSRNLIRSISPTAFDTQRSLEYLDLSGNALLDI---- 684
                                 :.|..|.||.||:.|:.|.|..:..:|::.|:|.|.|.:|    
 Worm   350 ---------------------TELHTLGLSHNLMTSLPPHALQSYPNLQHFDVSSNQLSEIDPQA 393

  Fly   685 --SVGLGNLNNLRDIDLSYNQISRIQSDVIGGWRNVVEIRLSNNLIVELQQGTFRNLPKLQYLDL 747
              |:|||    |..:|||.||:|.:...:                           ||.|..|||
 Worm   394 FPSIGLG----LISLDLSSNQLSSLPHPI---------------------------LPSLLLLDL 427

  Fly   748 SSNEIRNVEPGALKGLDELQEFVLADNKLVELK----------DHVFEELPSLLASHFQYNKLRY 802
            |.|.|.:::|....||..||:..:|.|..:..:          ||: :||.||:......:.|.:
 Worm   428 SFNTISHLDPHFFTGLPMLQQLRIASNPTLFSRCPNRDSPCWSDHL-DELTSLVDLDISNSGLEF 491

  Fly   803 ISPESFH--NANSLVFLNLSNNHFRNMENIGLRSMRNLEVLDLSTNGVKLVSTMPLKALNWLVEL 865
                |.|  :..:|..|.|..|..|.:::..|  ..||..|||..|.|:..|.  ...|..|.:|
 Worm   492 ----SLHWRHLRTLKSLILRGNEIRIIDSKSL--PENLRTLDLGENRVQFTSN--FSKLEHLRDL 548

  Fly   866 KMDNNQICRIQGSPFETMPRL 886
            ::|.|.: |...|.::.:|.|
 Worm   549 RVDQNPL-RCDCSLYDIVPHL 568

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
atkNP_649228.1 leucine-rich repeat 886..906 CDD:275380 1/1 (100%)
PCC 891..>936 CDD:188093
leucine-rich repeat 69..89 CDD:275380
leucine-rich repeat 90..113 CDD:275380
LRR 93..530 CDD:443914 51/173 (29%)
leucine-rich repeat 115..138 CDD:275380
leucine-rich repeat 139..160 CDD:275380
leucine-rich repeat 161..184 CDD:275380
leucine-rich repeat 185..209 CDD:275380
leucine-rich repeat 210..233 CDD:275380
leucine-rich repeat 234..259 CDD:275380
leucine-rich repeat 260..283 CDD:275380
leucine-rich repeat 284..307 CDD:275380
leucine-rich repeat 308..359 CDD:275380
leucine-rich repeat 334..348 CDD:275378
PLN00113 359..>824 CDD:215061 137/542 (25%)
leucine-rich repeat 360..383 CDD:275380 3/12 (25%)
leucine-rich repeat 384..407 CDD:275380 7/22 (32%)
leucine-rich repeat 408..431 CDD:275380 7/22 (32%)
leucine-rich repeat 432..455 CDD:275380 6/22 (27%)
leucine-rich repeat 456..476 CDD:275380 8/19 (42%)
leucine-rich repeat 480..501 CDD:275380 7/21 (33%)
leucine-rich repeat 505..517 CDD:275378 4/14 (29%)
leucine-rich repeat 525..550 CDD:275380 5/32 (16%)
leucine-rich repeat 551..574 CDD:275380 6/22 (27%)
leucine-rich repeat 575..598 CDD:275380 7/35 (20%)
leucine-rich repeat 599..622 CDD:275380 8/54 (15%)
leucine-rich repeat 623..646 CDD:275380 1/22 (5%)
leucine-rich repeat 647..670 CDD:275380 9/22 (41%)
leucine-rich repeat 671..693 CDD:275380 10/27 (37%)
leucine-rich repeat 694..717 CDD:275380 7/22 (32%)
leucine-rich repeat 718..741 CDD:275380 1/22 (5%)
leucine-rich repeat 742..763 CDD:275380 8/20 (40%)
leucine-rich repeat 766..789 CDD:275380 8/32 (25%)
leucine-rich repeat 790..813 CDD:275380 4/24 (17%)
leucine-rich repeat 814..835 CDD:275380 6/20 (30%)
leucine-rich repeat 838..861 CDD:275380 8/22 (36%)
leucine-rich repeat 862..885 CDD:275380 6/22 (27%)
lron-5NP_497943.2 LRR <48..>186 CDD:443914 47/147 (32%)
leucine-rich repeat 51..72 CDD:275380 7/22 (32%)
leucine-rich repeat 73..96 CDD:275380 7/22 (32%)
leucine-rich repeat 97..120 CDD:275380 6/22 (27%)
leucine-rich repeat 121..146 CDD:275380 9/24 (38%)
leucine-rich repeat 147..168 CDD:275380 7/20 (35%)
leucine-rich repeat 169..208 CDD:275380 8/38 (21%)
leucine-rich repeat 209..237 CDD:275380 5/27 (19%)
leucine-rich repeat 238..284 CDD:275380 11/49 (22%)
leucine-rich repeat 327..351 CDD:275380 9/50 (18%)
LRR <348..>555 CDD:443914 72/267 (27%)
leucine-rich repeat 352..375 CDD:275380 9/22 (41%)
leucine-rich repeat 376..391 CDD:275380 6/14 (43%)
leucine-rich repeat 401..445 CDD:275380 19/70 (27%)
leucine-rich repeat 446..478 CDD:275380 8/32 (25%)
leucine-rich repeat 479..500 CDD:275380 4/24 (17%)
leucine-rich repeat 501..522 CDD:275380 6/22 (27%)
leucine-rich repeat 523..544 CDD:275380 8/22 (36%)
LRRCT 553..601 CDD:214507 5/17 (29%)
Blue background indicates that the domain is not in the aligned region.

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