DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment atk and sym-1

DIOPT Version :9

Sequence 1:NP_001262113.1 Gene:atk / 40266 FlyBaseID:FBgn0036995 Length:1535 Species:Drosophila melanogaster
Sequence 2:NP_510426.1 Gene:sym-1 / 181555 WormBaseID:WBGene00006366 Length:680 Species:Caenorhabditis elegans


Alignment Length:709 Identity:159/709 - (22%)
Similarity:272/709 - (38%) Gaps:164/709 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   523 RIVERISLKGNQITSLPAAASKDLQLPNLRMLDLSQNRIEQLPRHGFQGAMELRVLSLAQNELRQ 587
            |:||::|    ..|::..   ::|.|.|..::::.....:.|         .::.|.|:.|.:.:
 Worm    49 RMVEKLS----TTTTMEV---RELALENADIIEVGPKAFKTL---------RIKKLILSNNRIEK 97

  Fly   588 LKDTSFIGIQR-LELLHLQENQLGEADERALLPLAELRNLNLQSNKLEAITDNFFSNNSRLEQLD 651
            :.|.:|.|::. ::.|.|.||.|.|....||..|..|..|:|:.||:|.||...|.|.:.|..::
 Worm    98 IHDHAFTGLENVMQELSLSENNLKEVPTSALAGLRVLNILSLKCNKIENITTKAFVNMTSLIDVN 162

  Fly   652 LSRNLIRSISPTAF-DTQRSLEYLDLSGNALLDI-SVGLGNLNNLRDIDLSYNQISRIQSDVIGG 714
            |..|.|.|::...| :.:.||:.|.|..|.:.:. |..:.|:|||..:.:.||:|:.|:.:....
 Worm   163 LGCNQICSMAADTFANVKMSLQNLILDNNCMTEFPSKAVRNMNNLIALHIKYNKINAIRQNDFVN 227

  Fly   715 WRNVVEIRLSNNLIVELQQGTFRNLPKLQYLDLSSNEIRNVEPGALKGLDELQEFVLADNKLVEL 779
            ..::..:.|:.|.|.|::.|..:|.|.|.||.|:.|.::.::.|.|:...:||...|:.|...::
 Worm   228 LTSLSMLSLNGNNISEIKGGALQNTPNLHYLYLNENNLQTLDNGVLEQFKQLQVLDLSFNNFTDI 292

  Fly   780 KDHVFEELPSLLASHFQYNKLRYISPESFHNANSLVFLNLSNNHFRNMENIGLRSMRNLEVLDLS 844
            ...:||.|.|:...:...|::..::|.:| ....|:.|.|.||....                  
 Worm   293 TKEMFEGLESIQHLNLDSNRISAVAPGAF-AGTPLLLLWLPNNCLTE------------------ 338

  Fly   845 TNGVKLVSTMPLKALNWLVELKMDNNQICRIQGSPFETMPRLRVLSMRNNQLRSIKERTFRNVRG 909
                  ||...||...:|..:.:.||.|..:....|:.:|.|..|.:.||::.|::.::..... 
 Worm   339 ------VSQQTLKGAPFLRMVSLSNNNIREVHELSFDHLPNLHTLDLANNKIMSLQNKSLSGPE- 396

  Fly   910 NIAILDVDGNPIDC---------NCEMQWLSVWLQETNFPYPG----------PKCQDGRLLRSA 955
            |:|: .:..||:.|         :.|..||:   .|.|....|          ||.|       .
 Worm   397 NLAV-RLQENPVVCVKNGFHVLNSGEAIWLT---NEANTICKGEWQAQTADLCPKAQ-------P 450

  Fly   956 RMERSLCVGADIYGNERTDGNQLPLLNEHGDVFQRDLPDDFNDECEAGEGTRLPGDRPLVGES-- 1018
            |..|.:|...:|.....|......|           .|....:| |..|.|........||:|  
 Worm   451 RPIRPVCCSNEITTTTTTTTTTTTL-----------APTTTTEE-EKEETTETTEKVTTVGKSKK 503

  Fly  1019 ----------EYFYDQYV-DATEAPDTTHSAISTSQRPKPTPTINSNIDLNNTILHTKYFNRKPQ 1072
                      |...|.|| |..|..:.....:||:::...|.|..:....:..:...:::....:
 Worm   504 TKATTTTEEPEDDEDVYVDDDEEGTEEEEEEVSTTEKSTTTTTTTTEASKSKKVNMERFWRLSNK 568

  Fly  1073 PGSGSPFTFFGYPLPSVSLGRFFGFGDRGRKQRTDSNDDMPATHRMAHISLPSGRGKTRMYQPNS 1137
            |...|||.....             |::.|..:|.:.                        .|..
 Worm   569 PSGKSPFLRHSQ-------------GNKPRYLQTTTE------------------------APEE 596

  Fly  1138 AEFEKYLKDQQKQEKLNIARNRYVDTDSTTSSMEDALSNESGSAATTVGVFRTTFREPS 1196
            .:..:|:.|                         |..:.||..|.|||..  ||..|||
 Worm   597 EDEAEYISD-------------------------DGGAEESEEAETTVAT--TTTTEPS 628

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
atkNP_001262113.1 leucine-rich repeat 69..89 CDD:275380
leucine-rich repeat 90..113 CDD:275380
leucine-rich repeat 115..138 CDD:275380
leucine-rich repeat 139..160 CDD:275380
leucine-rich repeat 161..184 CDD:275380
LRR_8 183..244 CDD:290566
leucine-rich repeat 185..209 CDD:275380
LRR_4 209..247 CDD:289563
leucine-rich repeat 210..233 CDD:275380
leucine-rich repeat 234..259 CDD:275380
LRR_RI 250..492 CDD:238064
LRR_8 259..318 CDD:290566
leucine-rich repeat 260..283 CDD:275380
leucine-rich repeat 284..307 CDD:275380
leucine-rich repeat 308..359 CDD:275380
leucine-rich repeat 334..348 CDD:275378
LRR_8 358..418 CDD:290566
leucine-rich repeat 360..383 CDD:275380
leucine-rich repeat 384..407 CDD:275380
LRR_8 406..466 CDD:290566
leucine-rich repeat 408..431 CDD:275380
leucine-rich repeat 432..455 CDD:275380
LRR_RI 447..705 CDD:238064 52/184 (28%)
LRR_8 454..514 CDD:290566
leucine-rich repeat 456..476 CDD:275380
leucine-rich repeat 480..501 CDD:275380
leucine-rich repeat 505..517 CDD:275378
leucine-rich repeat 525..550 CDD:275380 6/24 (25%)
LRR_8 549..609 CDD:290566 12/60 (20%)
leucine-rich repeat 551..574 CDD:275380 1/22 (5%)
leucine-rich repeat 575..598 CDD:275380 6/22 (27%)
leucine-rich repeat 599..622 CDD:275380 9/22 (41%)
LRR_8 622..681 CDD:290566 21/59 (36%)
leucine-rich repeat 623..646 CDD:275380 10/22 (45%)
LRR_RI 647..896 CDD:238064 64/250 (26%)
leucine-rich repeat 647..670 CDD:275380 6/23 (26%)
leucine-rich repeat 671..693 CDD:275380 6/22 (27%)
leucine-rich repeat 694..717 CDD:275380 5/22 (23%)
LRR_8 716..776 CDD:290566 18/59 (31%)
leucine-rich repeat 718..741 CDD:275380 6/22 (27%)
leucine-rich repeat 742..763 CDD:275380 7/20 (35%)
LRR_8 765..824 CDD:290566 16/58 (28%)
leucine-rich repeat 766..789 CDD:275380 7/22 (32%)
leucine-rich repeat 790..813 CDD:275380 3/22 (14%)
leucine-rich repeat 814..835 CDD:275380 5/20 (25%)
leucine-rich repeat 838..861 CDD:275380 4/22 (18%)
LRR_8 862..921 CDD:290566 14/58 (24%)
leucine-rich repeat 862..885 CDD:275380 5/22 (23%)
leucine-rich repeat 886..906 CDD:275380 5/19 (26%)
TPKR_C2 919..>946 CDD:301599 10/45 (22%)
sym-1NP_510426.1 leucine-rich repeat 62..81 CDD:275380 3/21 (14%)
LRR_5 74..208 CDD:290045 41/142 (29%)
LRR_RI 81..384 CDD:238064 90/336 (27%)
leucine-rich repeat 86..108 CDD:275380 6/21 (29%)
leucine-rich repeat 110..133 CDD:275380 9/22 (41%)
leucine-rich repeat 134..157 CDD:275380 10/22 (45%)
leucine-rich repeat 158..182 CDD:275380 6/23 (26%)
LRR_8 182..241 CDD:290566 16/58 (28%)
leucine-rich repeat 183..206 CDD:275380 6/22 (27%)
leucine-rich repeat 207..230 CDD:275380 5/22 (23%)
leucine-rich repeat 231..254 CDD:275380 6/22 (27%)
LRR_8 253..313 CDD:290566 17/59 (29%)
leucine-rich repeat 255..278 CDD:275380 7/22 (32%)
leucine-rich repeat 279..302 CDD:275380 7/22 (32%)
LRR_8 302..384 CDD:290566 23/106 (22%)
leucine-rich repeat 303..323 CDD:275380 3/20 (15%)
leucine-rich repeat 350..373 CDD:275380 5/22 (23%)
leucine-rich repeat 374..394 CDD:275380 5/19 (26%)
leucine-rich repeat 399..410 CDD:275378 3/11 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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