DRSC/TRiP Functional Genomics Resources

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Protein Alignment atk and Tlr3

DIOPT Version :9

Sequence 1:NP_001262113.1 Gene:atk / 40266 FlyBaseID:FBgn0036995 Length:1535 Species:Drosophila melanogaster
Sequence 2:NP_001344245.1 Gene:Tlr3 / 142980 MGIID:2156367 Length:905 Species:Mus musculus


Alignment Length:787 Identity:205/787 - (26%)
Similarity:320/787 - (40%) Gaps:184/787 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   204 FDGLISLKNLDLSHNGLNWIHLRALSRLPNLVSLKLSHNQISDVGMVGRIVKDLEHLKKLRLDNN 268
            |.||:||           ||         .|||   |.||.:    |...|.|..|||       
Mouse    12 FGGLLSL-----------WI---------LLVS---STNQCT----VRYNVADCSHLK------- 42

  Fly   269 LITVIEDGSFVDLP-NLSELHLNDNRITELQYGAFLRTPQLKTIYLQNNLIRRIHPESLLQASGS 332
             :|.|.|    ||| |::.|:|..|::..|....|.|..||..:....|.|.::.||        
Mouse    43 -LTHIPD----DLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPE-------- 94

  Fly   333 GVEAVHMYNNEIGHVEALRALLDALPRLRYLDMSGNLLSELPYGALRGHGTLEQLHLNHNHLRLI 397
                                |...||.|:.|::..|.||::..........|.:|.|..|.:..|
Mouse    95 --------------------LCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKI 139

  Fly   398 ERDALMAMPALRELRMRNNSLSSDLPLPFWNLPGLKGLDLAQNQFARVDSQLL--AGLPSLRRLD 460
            :.:.......|.:|.:.:|.|||........|..|:.|.||:|:...:.|:.|  .|..|||:||
Mouse   140 KSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLD 204

  Fly   461 LSENGLIELAPNSFR---------------------------HNPLLETLNISSNELTKIHSSTL 498
            ||.|.|.|.:|..|:                           .|..::.|::::|:|.....||.
Mouse   205 LSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTF 269

  Fly   499 IHLE--RLFEVDASYNQLKSVIAGLPRIVERISLKGNQITSLPAAASKDLQLPNLRMLDLSQNRI 561
            ..|:  .|.::|.|||.|..|              ||...|         .||:||.|.|..|.|
Mouse   270 SGLKWTNLTQLDLSYNNLHDV--------------GNGSFS---------YLPSLRYLSLEYNNI 311

  Fly   562 EQLPRHGFQGAMELRVLSLAQNELRQ---------LKDTSFIGIQRLELLHLQENQLGEADERAL 617
            ::|....|.|...||.|||.:...:|         :.|.||..::.||.|::.:|.:........
Mouse   312 QRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTF 376

  Fly   618 LPLAELRNLNLQS--NKLEAITDNFFSN--NSRLEQLDLSRNLIRSISPTAFDTQRSLEYLDLSG 678
            ..|..|:.|:|..  ..|:.:|:..|.:  :|.|..|:|::|.|..|:...|..           
Mouse   377 TGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSW----------- 430

  Fly   679 NALLDISVGLGNLNNLRDIDLSYNQI-SRIQSDVIGGWRNVVEIRLSNNLIVELQQGTFRNLPKL 742
                        |..||.:||..|:| .::......|.||:.||.||.|..::|...:|..:|.|
Mouse   431 ------------LGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSL 483

  Fly   743 QYLDLSSNEIRNVE--PGALKGLDELQEFVLADNKLVELKDHVFEELPSLLASHFQYNKLRYISP 805
            |.|.|....::||:  |...:.|..|....|::|.:..:.:.:.|.|.:|....||:|.|..:  
Mouse   484 QRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARL-- 546

  Fly   806 ESFHNANSLVFLNLSNNHFRNMENIGLRSMRNLEVLDLSTNGVKLVSTMPLKALNWLVELKMDN- 869
              :..||....:|.            |:.:.:|.:|:|.:||   :..:|:.....|.|||..| 
Mouse   547 --WKRANPGGPVNF------------LKGLSHLHILNLESNG---LDEIPVGVFKNLFELKSINL 594

  Fly   870 --NQICRIQGSPFETMPRLRVLSMRNNQLRSIKERTFRNVRGNIAILDVDGNPIDCNCE-MQWLS 931
              |.:.:::...|:....||.|:::.|.:.|:::..|.....|:..||:..||.||.|| :.|..
Mouse   595 GLNNLNKLEPFIFDDQTSLRSLNLQKNLITSVEKDVFGPPFQNLNSLDMRFNPFDCTCESISWFV 659

  Fly   932 VWLQETN 938
            .|:.:|:
Mouse   660 NWINQTH 666

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
atkNP_001262113.1 leucine-rich repeat 69..89 CDD:275380
leucine-rich repeat 90..113 CDD:275380
leucine-rich repeat 115..138 CDD:275380
leucine-rich repeat 139..160 CDD:275380
leucine-rich repeat 161..184 CDD:275380
LRR_8 183..244 CDD:290566 12/39 (31%)
leucine-rich repeat 185..209 CDD:275380 3/4 (75%)
LRR_4 209..247 CDD:289563 10/37 (27%)
leucine-rich repeat 210..233 CDD:275380 3/22 (14%)
leucine-rich repeat 234..259 CDD:275380 9/24 (38%)
LRR_RI 250..492 CDD:238064 69/271 (25%)
LRR_8 259..318 CDD:290566 19/59 (32%)
leucine-rich repeat 260..283 CDD:275380 8/23 (35%)
leucine-rich repeat 284..307 CDD:275380 6/22 (27%)
leucine-rich repeat 308..359 CDD:275380 7/50 (14%)
leucine-rich repeat 334..348 CDD:275378 0/13 (0%)
LRR_8 358..418 CDD:290566 14/59 (24%)
leucine-rich repeat 360..383 CDD:275380 5/22 (23%)
leucine-rich repeat 384..407 CDD:275380 5/22 (23%)
LRR_8 406..466 CDD:290566 23/61 (38%)
leucine-rich repeat 408..431 CDD:275380 7/22 (32%)
leucine-rich repeat 432..455 CDD:275380 8/24 (33%)
LRR_RI 447..705 CDD:238064 78/302 (26%)
LRR_8 454..514 CDD:290566 24/88 (27%)
leucine-rich repeat 456..476 CDD:275380 11/46 (24%)
leucine-rich repeat 480..501 CDD:275380 5/20 (25%)
leucine-rich repeat 505..517 CDD:275378 5/11 (45%)
leucine-rich repeat 525..550 CDD:275380 4/24 (17%)
LRR_8 549..609 CDD:290566 23/68 (34%)
leucine-rich repeat 551..574 CDD:275380 9/22 (41%)
leucine-rich repeat 575..598 CDD:275380 9/31 (29%)
leucine-rich repeat 599..622 CDD:275380 5/22 (23%)
LRR_8 622..681 CDD:290566 14/62 (23%)
leucine-rich repeat 623..646 CDD:275380 6/26 (23%)
LRR_RI 647..896 CDD:238064 64/254 (25%)
leucine-rich repeat 647..670 CDD:275380 7/22 (32%)
leucine-rich repeat 671..693 CDD:275380 1/21 (5%)
leucine-rich repeat 694..717 CDD:275380 7/23 (30%)
LRR_8 716..776 CDD:290566 21/61 (34%)
leucine-rich repeat 718..741 CDD:275380 7/22 (32%)
leucine-rich repeat 742..763 CDD:275380 7/22 (32%)
LRR_8 765..824 CDD:290566 13/58 (22%)
leucine-rich repeat 766..789 CDD:275380 5/22 (23%)
leucine-rich repeat 790..813 CDD:275380 6/22 (27%)
leucine-rich repeat 814..835 CDD:275380 2/20 (10%)
leucine-rich repeat 838..861 CDD:275380 6/22 (27%)
LRR_8 862..921 CDD:290566 17/61 (28%)
leucine-rich repeat 862..885 CDD:275380 7/25 (28%)
leucine-rich repeat 886..906 CDD:275380 6/19 (32%)
TPKR_C2 919..>946 CDD:301599 9/21 (43%)
Tlr3NP_001344245.1 leucine-rich repeat 37..53 CDD:275380 10/27 (37%)
LRR 1 53..74 6/20 (30%)
leucine-rich repeat 54..77 CDD:275380 6/22 (27%)
PLN00113 70..>543 CDD:215061 139/546 (25%)
LRR 2 77..98 7/48 (15%)
leucine-rich repeat 78..101 CDD:275380 7/50 (14%)
LRR 3 101..122 5/20 (25%)
leucine-rich repeat 102..125 CDD:275380 5/22 (23%)
LRR 4 125..146 5/20 (25%)
leucine-rich repeat 126..149 CDD:275380 5/22 (23%)
LRR 5 149..170 6/20 (30%)
leucine-rich repeat 150..199 CDD:275380 15/48 (31%)
LRR 6 173..196 7/22 (32%)
LRR 7 199..220 12/20 (60%)
leucine-rich repeat 200..250 CDD:275380 12/49 (24%)
LRR 8 250..271 5/20 (25%)
leucine-rich repeat 251..276 CDD:275380 6/24 (25%)
LRR 9 276..297 10/43 (23%)
leucine-rich repeat 277..300 CDD:275380 11/45 (24%)
LRR 10 300..321 8/20 (40%)
leucine-rich repeat 301..324 CDD:275380 9/22 (41%)
LRR 11 324..345 6/20 (30%)
leucine-rich repeat 325..381 CDD:275380 14/55 (25%)
LRR 12 357..378 4/20 (20%)
LRR 13 381..401 5/19 (26%)
leucine-rich repeat 382..433 CDD:275380 15/73 (21%)
LRR 14 409..430 7/20 (35%)
LRR 15 433..454 6/20 (30%)
leucine-rich repeat 434..458 CDD:275380 7/23 (30%)
LRR 16 458..479 8/20 (40%)
leucine-rich repeat 459..482 CDD:275380 7/22 (32%)
LRR 17 482..502 7/19 (37%)
leucine-rich repeat 483..508 CDD:275380 8/24 (33%)
PPP1R42 503..>649 CDD:411060 39/164 (24%)
LRR 18 508..529 3/20 (15%)
leucine-rich repeat 509..532 CDD:275380 5/22 (23%)
LRR 19 532..553 7/24 (29%)
leucine-rich repeat 533..564 CDD:275380 9/46 (20%)
LRR 20 564..585 6/23 (26%)
leucine-rich repeat 565..586 CDD:275380 6/23 (26%)
LRR 21 588..609 6/20 (30%)
leucine-rich repeat 589..610 CDD:275378 5/20 (25%)
LRR 22 612..633 6/20 (30%)
leucine-rich repeat 613..637 CDD:275380 6/23 (26%)
LRRCT 646..698 CDD:214507 9/21 (43%)
Tlr3_TMD 699..731 CDD:407816
TIR 756..901 CDD:214587
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R9623
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

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