DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment atk and nrros

DIOPT Version :9

Sequence 1:NP_001262113.1 Gene:atk / 40266 FlyBaseID:FBgn0036995 Length:1535 Species:Drosophila melanogaster
Sequence 2:NP_001231915.1 Gene:nrros / 100498580 XenbaseID:XB-GENE-986206 Length:679 Species:Xenopus tropicalis


Alignment Length:831 Identity:187/831 - (22%)
Similarity:300/831 - (36%) Gaps:258/831 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   220 LNWIHLRALSRLPNLVSLKLSHNQISDVGMVGRIVKDLEHLKKLRLDNNLITVIED--------- 275
            |.|.:..|..:|......||.:.           |.|..||:.|.:..||.|.|::         
 Frog    17 LQWKYNGAEGKLSTESGCKLFYR-----------VADCSHLQLLSVPQNLPTDIQELLLDFNQIR 70

  Fly   276 ----GSFVDLPNLSELHLNDNRITELQYGAFLRTPQLKTIYLQNNLIRRIHPESLLQASGSGVEA 336
                .||:...:|:.|.|..||:..::.|||.....||.:.||||.|..                
 Frog    71 FLHKNSFLRYHDLTNLSLRSNRMEFVEPGAFNGIRSLKVLSLQNNTISM---------------- 119

  Fly   337 VHMYNNEIGHVEALRALLDALPRLRYLDMSGNLLSELPYGALRGHGTLEQLHLNHNHLRLIERDA 401
                     ..|...|.|...|.|:.||:|.|:|            |::.:.:.|.:|..:||  
 Frog   120 ---------EYELTSAALRLTPSLKELDLSRNML------------TMDMVSVLHQNLTSLER-- 161

  Fly   402 LMAMPALRELRMRNNSLSSDLPLPFWNLPGLKGLDLAQNQFARVDSQLLAGLPSLRRLDLSENGL 466
                     |.:.||.:.......|..|..||.|.|..|....::.....||..|::|||:.|  
 Frog   162 ---------LFLDNNIIMRLDQTVFEGLVHLKELSLQWNYIYEIEDGTFEGLVKLKKLDLAYN-- 215

  Fly   467 IELAP--NSFRHNPLLETLNISSNELTKIHSSTLIHLERLFEVDASYNQLKSVIAGLPRIVERIS 529
              |.|  ..||... ::.||:|.|.|....|.         |.|..:                  
 Frog   216 --LLPCIGDFRLTQ-IQMLNLSFNNLEWFQSQ---------ETDVEF------------------ 250

  Fly   530 LKGNQITSLPAAASKDLQLPNLRMLDLSQNRI---EQLPRHGFQGAMELRVLSLAQNELRQLKDT 591
                                :|.:||:|.|::   ..|||.     ..|..|.|:.|.:|...|.
 Frog   251 --------------------HLEILDISNNQLLFFPLLPRQ-----HRLHTLLLSNNRMRFYGDI 290

  Fly   592 SFIGIQRLELLHLQENQLGEADERALLPLAELRNLNLQSNKLEAITDNFFSNNSRLEQLDLSRNL 656
            ......|.:.|.::.|            :..:..::|.|       |:..||.|.|..||:|.|.
 Frog   291 FGTNTSRADFLIVENN------------ITSVTTVDLWS-------DDIHSNLSTLHYLDMSHNQ 336

  Fly   657 IRSISPTAFDTQRSLEYLDLSGNALLDISVGLGNLNNLRD-IDLSYNQISRIQSDVIG-GWRNVV 719
            ........|....||.||.|:.|.|...||...|:.:|.| :|||.|::..:|:|.|. |..::.
 Frog   337 FAFFPHGFFSNMSSLAYLKLNWNCLQVFSVSPSNITSLLDELDLSNNELLELQADNISPGILSLS 401

  Fly   720 EIRLSNNLIVELQQGTFRNLPKLQYLDLSSNEIRNVEPGALKGLDELQEFVLADNKLVELKDHVF 784
            ...||:|.:..|.:..|.::.::..:|:|:|.:.         |....|..:.:.|.|::::   
 Frog   402 YFNLSSNNLYNLPKNIFTSMTRIHTIDMSNNPLH---------LCSQSELRMGEGKCVDVRN--- 454

  Fly   785 EELPSL-------------LASHFQYNKLRYISPESFHNANSLVFLNLSNNHFRNMENIGLRS-- 834
              :|||             |...|..|.|.::. .|::|...:.||   .:..|.::::.|||  
 Frog   455 --VPSLRRLYLSGCGMELGLQRVFYGNTLTHLD-LSYNNIKGITFL---ADTARTLQSLFLRSCL 513

  Fly   835 ----------MRNLEVLDLSTNGVKLVSTMPLKALNWLVELKMDNNQICRIQGSPFETMPRLRVL 889
                      ..:|.|||:|.|.   ::|.| .:|..|.                      |..|
 Frog   514 AFNITVDFSVFMSLTVLDISGNA---LTTFP-ASLTGLA----------------------LHYL 552

  Fly   890 SMRNNQLRSIKERTFRNVRGNIAILDVDGNPIDCNCEMQWLSVWLQETNFPYPGPKCQDGRLLRS 954
            .:.||.|.|:.....:.:.|::.|:.:..|..|| ||:.|::|.:.....|              
 Frog   553 DLHNNNLISLPLYNTQRLIGSLKIVYISNNSFDC-CELGWMNVLIHSIRIP-------------- 602

  Fly   955 ARMERSLCVGADIYGNERTDGNQLPLLNEHGDVFQRDLPDDFNDECEAGEG 1005
             .:::..|..::.|         .|:.|         ||:..|..|:...|
 Frog   603 -DLQKVTCSFSNRY---------FPVWN---------LPESINHSCQWTNG 634

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
atkNP_001262113.1 leucine-rich repeat 69..89 CDD:275380
leucine-rich repeat 90..113 CDD:275380
leucine-rich repeat 115..138 CDD:275380
leucine-rich repeat 139..160 CDD:275380
leucine-rich repeat 161..184 CDD:275380
LRR_8 183..244 CDD:290566 6/23 (26%)
leucine-rich repeat 185..209 CDD:275380
LRR_4 209..247 CDD:289563 6/26 (23%)
leucine-rich repeat 210..233 CDD:275380 4/12 (33%)
leucine-rich repeat 234..259 CDD:275380 4/24 (17%)
LRR_RI 250..492 CDD:238064 67/256 (26%)
LRR_8 259..318 CDD:290566 23/71 (32%)
leucine-rich repeat 260..283 CDD:275380 8/35 (23%)
leucine-rich repeat 284..307 CDD:275380 8/22 (36%)
leucine-rich repeat 308..359 CDD:275380 10/50 (20%)
leucine-rich repeat 334..348 CDD:275378 0/13 (0%)
LRR_8 358..418 CDD:290566 15/59 (25%)
leucine-rich repeat 360..383 CDD:275380 6/22 (27%)
leucine-rich repeat 384..407 CDD:275380 4/22 (18%)
LRR_8 406..466 CDD:290566 17/59 (29%)
leucine-rich repeat 408..431 CDD:275380 5/22 (23%)
leucine-rich repeat 432..455 CDD:275380 7/22 (32%)
LRR_RI 447..705 CDD:238064 64/263 (24%)
LRR_8 454..514 CDD:290566 17/61 (28%)
leucine-rich repeat 456..476 CDD:275380 8/21 (38%)
leucine-rich repeat 480..501 CDD:275380 6/20 (30%)
leucine-rich repeat 505..517 CDD:275378 2/11 (18%)
leucine-rich repeat 525..550 CDD:275380 0/24 (0%)
LRR_8 549..609 CDD:290566 17/62 (27%)
leucine-rich repeat 551..574 CDD:275380 8/25 (32%)
leucine-rich repeat 575..598 CDD:275380 6/22 (27%)
leucine-rich repeat 599..622 CDD:275380 2/22 (9%)
LRR_8 622..681 CDD:290566 18/58 (31%)
leucine-rich repeat 623..646 CDD:275380 5/22 (23%)
LRR_RI 647..896 CDD:238064 67/275 (24%)
leucine-rich repeat 647..670 CDD:275380 6/22 (27%)
leucine-rich repeat 671..693 CDD:275380 9/21 (43%)
leucine-rich repeat 694..717 CDD:275380 10/24 (42%)
LRR_8 716..776 CDD:290566 10/59 (17%)
leucine-rich repeat 718..741 CDD:275380 5/22 (23%)
leucine-rich repeat 742..763 CDD:275380 3/20 (15%)
LRR_8 765..824 CDD:290566 14/71 (20%)
leucine-rich repeat 766..789 CDD:275380 3/22 (14%)
leucine-rich repeat 790..813 CDD:275380 7/35 (20%)
leucine-rich repeat 814..835 CDD:275380 6/32 (19%)
leucine-rich repeat 838..861 CDD:275380 9/22 (41%)
LRR_8 862..921 CDD:290566 10/58 (17%)
leucine-rich repeat 862..885 CDD:275380 1/22 (5%)
leucine-rich repeat 886..906 CDD:275380 6/19 (32%)
TPKR_C2 919..>946 CDD:301599 8/26 (31%)
nrrosNP_001231915.1 leucine-rich repeat 39..58 CDD:275380 7/29 (24%)
leucine-rich repeat 59..82 CDD:275380 3/22 (14%)
LRR_8 60..115 CDD:404697 14/54 (26%)
leucine-rich repeat 83..106 CDD:275380 8/22 (36%)
leucine-rich repeat 107..133 CDD:275380 10/50 (20%)
internalin_A 108..>495 CDD:380193 120/525 (23%)
leucine-rich repeat 134..158 CDD:275380 9/35 (26%)
leucine-rich repeat 159..182 CDD:275380 7/33 (21%)
leucine-rich repeat 183..206 CDD:275380 7/22 (32%)
leucine-rich repeat 207..227 CDD:275380 9/23 (39%)
leucine-rich repeat 228..251 CDD:275380 8/69 (12%)
leucine-rich repeat 274..326 CDD:275380 14/70 (20%)
leucine-rich repeat 327..350 CDD:275380 6/22 (27%)
leucine-rich repeat 351..374 CDD:275380 9/22 (41%)
leucine-rich repeat 375..399 CDD:275380 9/23 (39%)
leucine-rich repeat 400..421 CDD:275380 5/20 (25%)
leucine-rich repeat 424..457 CDD:275380 7/46 (15%)
leucine-rich repeat 458..480 CDD:275380 3/21 (14%)
leucine-rich repeat 481..503 CDD:275380 5/25 (20%)
leucine-rich repeat 504..526 CDD:275380 3/21 (14%)
leucine-rich repeat 527..548 CDD:275380 9/24 (38%)
leucine-rich repeat 574..586 CDD:275378 2/11 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D138601at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.