DRSC/TRiP Functional Genomics Resources

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Protein Alignment atk and igfals

DIOPT Version :9

Sequence 1:NP_001262113.1 Gene:atk / 40266 FlyBaseID:FBgn0036995 Length:1535 Species:Drosophila melanogaster
Sequence 2:XP_002940278.2 Gene:igfals / 100489984 XenbaseID:XB-GENE-1008441 Length:601 Species:Xenopus tropicalis


Alignment Length:552 Identity:155/552 - (28%)
Similarity:240/552 - (43%) Gaps:101/552 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   406 PALRELRMRNNSLSSDLPLPFWNLPGLKGLDLAQNQFARVDSQLLAGLPSLRRLDLSENGLIELA 470
            ||.|.|.:..|:|::.....|.||..|..|:|..:|.|.::.|.|.||.:|..|.|..|.:..||
 Frog    67 PAARSLWLDGNNLTTVQAGAFRNLSHLDFLNLQSSQVASLEQQALHGLKALAHLHLERNMIKSLA 131

  Fly   471 PNSFRHNPLLETLNISSNELTKIHSSTLIHLERLFEVDASYNQLKSVIAGLPRIVERISLKGNQI 535
            |::|.|...|.:|.:::|.||||.       :.||.                             
 Frog   132 PSTFTHTQNLVSLTLNNNFLTKIE-------DGLFS----------------------------- 160

  Fly   536 TSLPAAASKDLQLPNLRMLDLSQNRIEQLPRHGFQGAMELRVLSLAQNELRQLKDTSFIGIQRLE 600
                       .|.||..|:|..|.:..||...|...:.||.|.||.|.|..|:.:.|       
 Frog   161 -----------GLSNLWYLNLGWNLLVVLPDMVFHDLLNLRELVLAGNRLVYLQPSLF------- 207

  Fly   601 LLHLQENQLGEADERALLPLAELRNLNLQSNKLEAITDNFFSNNSRLEQLDLSRNLIRSISPTAF 665
                             |.|.||:.|:|..|.|:.|..|.|:...:..:|.|:.|.|.:::|.||
 Frog   208 -----------------LSLGELKELDLSGNSLKGIKANVFTRQQKTHKLYLNHNHISTVAPRAF 255

  Fly   666 DTQRSLEYLDLSGNALL----DISVGLGNLNNLRDIDLSYNQISRIQSDVIGGWRNVVEIRLSNN 726
            ...::|.:||||.|.|.    |...||.:||.||   ||.|.::.::..:....:.:||:.|..|
 Frog   256 SGMKNLRWLDLSHNRLTALYEDTFFGLPSLNVLR---LSNNSLTSLRPRIFKDLQFLVELNLGQN 317

  Fly   727 LIVELQQGTFRNLPKLQYLDLSSNEIRNVEPGALKGLDELQEFVLADNKLVELKDHVFEELPSLL 791
            .|..|.:.||..|.:|:.|.|:.|.::.:.||:..||..:....|:.|.|..|.:|.|:.|..|.
 Frog   318 KIKILLERTFEGLAQLELLSLNHNNVQEIRPGSFLGLLNVAVINLSGNCLKSLAEHCFKGLGKLH 382

  Fly   792 ASHFQYNKLRYISPESFHNANSLVFLNLSNNHFRNMENIGLRSMRNLEVLDLSTNGVKLVSTMPL 856
            :.|.:.:.|.:|.|:.|...:|:..|.|.||....:|:.....:..|..|||.:|.:..::|...
 Frog   383 SLHMESSCLSHIKPQMFAGLSSIRRLFLQNNEIVAIEDHSFTDLHGLLELDLRSNKLTHLTTRSF 447

  Fly   857 KALNWLVELKMDNNQICRIQGSPFETMPRLRVLSMRNNQLR----------------SIKERTFR 905
            ..|..|..|.:.:|||..|....|..:.:|:.|.:.:|||:                |:|....:
 Frog   448 TGLKNLSYLLLSSNQILTISPEVFSPVQQLQWLDLSDNQLKALTEDIFLPLSSLRYLSLKNNCLK 512

  Fly   906 NVRGNIAI-------LDVDGNPIDCNCEMQWL 930
            .:..|..|       |.::||..||.|.::.|
 Frog   513 TISVNFLIPPPTMQQLWLNGNQWDCGCALKGL 544

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
atkNP_001262113.1 leucine-rich repeat 69..89 CDD:275380
leucine-rich repeat 90..113 CDD:275380
leucine-rich repeat 115..138 CDD:275380
leucine-rich repeat 139..160 CDD:275380
leucine-rich repeat 161..184 CDD:275380
LRR_8 183..244 CDD:290566
leucine-rich repeat 185..209 CDD:275380
LRR_4 209..247 CDD:289563
leucine-rich repeat 210..233 CDD:275380
leucine-rich repeat 234..259 CDD:275380
LRR_RI 250..492 CDD:238064 31/85 (36%)
LRR_8 259..318 CDD:290566
leucine-rich repeat 260..283 CDD:275380
leucine-rich repeat 284..307 CDD:275380
leucine-rich repeat 308..359 CDD:275380
leucine-rich repeat 334..348 CDD:275378
LRR_8 358..418 CDD:290566 5/11 (45%)
leucine-rich repeat 360..383 CDD:275380