DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hpd and Hpdl

DIOPT Version :9

Sequence 1:NP_730536.1 Gene:Hpd / 40263 FlyBaseID:FBgn0036992 Length:380 Species:Drosophila melanogaster
Sequence 2:NP_666368.1 Gene:Hpdl / 242642 MGIID:2444646 Length:371 Species:Mus musculus


Alignment Length:380 Identity:102/380 - (26%)
Similarity:176/380 - (46%) Gaps:46/380 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 HLTFYVGNAKQAASYYTTRLGFEPLGYQGLETGERRFAKHAVRQNKIVFVFVSAYTPDDEEHGLH 85
            |:.|:|...:..|.......||:||..:  |.|..|  :.|:|....||:......|.:..:.|.
Mouse    10 HIAFHVPAGQPLARDLHRVFGFQPLAVR--EAGGWR--QLALRSGDAVFLVNEGTGPQEPLYSLD 70

  Fly    86 LMRHGDGVKDVAFEVEDLNAIFTLAVSRGAEVVRDIWEESDDQGFVRFATIKT-YGDTTHTFVER 149
            .........::.|:|||::.......:||..:........|.||...:..:.: .|:.:.|.::|
Mouse    71 PHHSVPSATNLCFDVEDVDGAARALAARGCIMPVPPTRVRDAQGTATYTVLSSPAGNLSLTLLQR 135

  Fly   150 NGYAGDFLPGFQRSPKDVLLNGLPSTK----LNFIDHVV-----GNQPDLQMESVASWYERILQF 205
            .||.|.|||||:         .||.|.    ::.:||:.     |:.|.|.     .|:...|.|
Mouse   136 AGYRGSFLPGFR---------PLPCTPGPGWVSHVDHLTLACTSGSSPMLM-----RWFHDCLGF 186

  Fly   206 HR--FWSVDDSQIHTEYSA------LRSIVMA----NYEETVKMPINEPANGKKKSQIQEYVEYY 258
            |.  ....:|.::..:.:|      ||...:.    |...|:.:..:.|....|:.|:::::..:
Mouse   187 HHLPLSPGEDPEMGLKVAAGSGRGGLRLTALQTPPNNTVPTLVLAESLPGLNSKQDQVEQFLTRH 251

  Fly   259 GGGGVQHIALNTDDIIEAVSNLKARGTEFLTIPSSYYEI--LQEQLSHSRTKIKEDMEVLKKLNI 321
            ||.|:||:.|.|.:||:|...:...|...||.|.:||:.  .:||:..:..|    ..:|::..|
Mouse   252 GGPGLQHVGLYTPNIIDASEGMAKAGCRLLTPPEAYYQQPGKEEQILAAGHK----PGLLERQGI 312

  Fly   322 LIDFDENGYLLQIFTKNCQDRPTLFLEVIQRYNHNGFGAGNFKSLFTAIEIEQAK 376
            |:|.|::.:|||:|||:.....|.|||:|||....|||..|.::|:.:::.|.|:
Mouse   313 LLDGDKDEFLLQVFTKSLFAEDTFFLELIQRQGATGFGQNNIRALWQSVQEEAAR 367

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HpdNP_730536.1 4HPPD 17..380 CDD:273528 102/380 (27%)
HpdlNP_666368.1 4HPPD 10..367 CDD:273528 101/378 (27%)
Glo_EDI_BRP_like 10..148 CDD:301325 37/150 (25%)
HPPD_C_like 158..363 CDD:176673 60/213 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3185
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.