DRSC/TRiP Functional Genomics Resources

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Protein Alignment Psn and psen1

DIOPT Version :9

Sequence 1:NP_001262111.1 Gene:Psn / 40260 FlyBaseID:FBgn0284421 Length:541 Species:Drosophila melanogaster
Sequence 2:XP_031746154.1 Gene:psen1 / 394924 XenbaseID:XB-GENE-481916 Length:490 Species:Xenopus tropicalis


Alignment Length:563 Identity:251/563 - (44%)
Similarity:332/563 - (58%) Gaps:106/563 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 AAVNLQASCSSGLASE---DDANVGSQIGAAERLE--------RP-------PRRQQQRNNYGSS 48
            |.|:...||..|:..:   ::..:....|..::::        ||       .||..:.:...|:
 Frog    11 ATVSRDVSCCVGILCKTGGEELVINILPGRLQQIQETEDFTDNRPANMNDTNERRSNEHSESQSN 75

  Fly    49 NQDQPDAAILAVPNVVMREPCGSRPSRLTGGGGGSGGPPTNEMEEEQGLKYGAQHVIKLFVPVSL 113
            .|.|..:      ..|:.:                    ..|.:||..|||||:|||.|||||:|
 Frog    76 GQTQSSS------QQVLEQ--------------------DEEEDEELTLKYGAKHVIMLFVPVTL 114

  Fly   114 CMLVVVATINSISFYNSTDVYLLYTPFHEQSPEPSVKFWSALANSLILMSVVVVMTFLLIVLYKK 178
            ||:||||||.|:|||...|..|:||||.|.:.....:..:::.|:.|::||::|||.||:||||.
 Frog   115 CMVVVVATIKSVSFYTRYDGQLIYTPFTEDTDSVGQRALNSILNTAIMISVIIVMTILLVVLYKY 179

  Fly   179 RCYRIIHGWLILSSFMLLFIFTYLYLEELLRAYNIPMDYPTALLIMWNFGVVGMMSIHWQGPLRL 243
            |||::||||||:||.:|||.|:|:||.|:.:.||:.|||.|..|::||||||||:.|||:|||.|
 Frog   180 RCYKVIHGWLIISSLLLLFFFSYIYLGEVFKTYNVAMDYITLALMIWNFGVVGMICIHWKGPLLL 244

  Fly   244 QQGYLIFVAALMALVFIKYLPEWTAWAVLAAISIWDLIAVLSPRGPLRILVETAQERNEQIFPAL 308
            ||.|||.::|||||||||||||||.|.:||.||::||||||||:||||:||||||||||.:||||
 Frog   245 QQAYLIMISALMALVFIKYLPEWTTWLILAVISVYDLIAVLSPKGPLRMLVETAQERNETLFPAL 309

  Fly   309 IYSSTVVYALVNTVTPQQSQATASSSPSSSNSTT-TTRATQNSLASPEAAAASGQRTGNSHPRQN 372
            |||||:::.:          ..|...|....|.: .|...|..:|.|.:.:|:....|       
 Frog   310 IYSSTMIWLV----------KMADGDPGFKQSASKKTYNAQAPVAQPRSDSAASDDNG------- 357

  Fly   373 QRDDGSVLATEGMPLVTFKSNLRGNAEAAGFTQEWSANLSERVARRQIEVQSTQSGNAQRSNEYR 437
                                         ||...|....:|::.    ::.||....|       
 Frog   358 -----------------------------GFDTAWEEQRNEQIG----QINSTPESRA------- 382

  Fly   438 TVTAPDQNHPDGQ--EERGIKLGLGDFIFYSVLVGKAS--SYGDWTTTIACFVAILIGLCLTLLL 498
            .|.|...|:|..:  ||||:||||||||||||||||||  :.|||.||:||||||||||||||||
 Frog   383 AVQALPSNNPPSEDPEERGVKLGLGDFIFYSVLVGKASATASGDWNTTLACFVAILIGLCLTLLL 447

  Fly   499 LAIWRKALPALPISITFGLIFCFATSAVVKPFMEDLSAKQVFI 541
            |||::||||||||||||||:|.|||..:|:|||:.|:..|.:|
 Frog   448 LAIFKKALPALPISITFGLVFYFATDYLVQPFMDQLAFHQFYI 490

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PsnNP_001262111.1 Presenilin 98..531 CDD:279427 228/437 (52%)
psen1XP_031746154.1 Presenilin 99..480 CDD:395857 228/437 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 421 1.000 Domainoid score I631
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 433 1.000 Inparanoid score I1669
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D357270at33208
OrthoFinder 1 1.000 - - FOG0002393
OrthoInspector 1 1.000 - - otm48735
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2736
SonicParanoid 1 1.000 - - X1815
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.090

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