DRSC/TRiP Functional Genomics Resources

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Protein Alignment Psn and spe-4

DIOPT Version :9

Sequence 1:NP_001262111.1 Gene:Psn / 40260 FlyBaseID:FBgn0284421 Length:541 Species:Drosophila melanogaster
Sequence 2:NP_492095.1 Gene:spe-4 / 172498 WormBaseID:WBGene00004958 Length:465 Species:Caenorhabditis elegans


Alignment Length:490 Identity:116/490 - (23%)
Similarity:209/490 - (42%) Gaps:77/490 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    88 TNEMEEEQGLKYGAQHVIKLFVPVSLCMLVVVATINSISFYNSTDVYLLYTPFHEQSPEPSVK-F 151
            ::|:.....|::....||   ..:||.:.:.:...|.......:..|.|...|.:.:....:. |
 Worm     8 SSELVRSSQLRWTLFSVI---ANMSLTLSIWIGVYNMEVNSELSKTYFLDPSFEQTTGNLLLDGF 69

  Fly   152 WSALANSLILMSVVVVMTFLLIVLYKKRCYRIIHGWLILSSFMLLF---------IFTYLYLEEL 207
            .:.:...|:|..|..:|  |..||:..|  ||:..||.||..::||         :|:.::.::.
 Worm    70 INGVGTILVLGCVSFIM--LAFVLFDFR--RIVKAWLTLSCLLILFGVSAQTLHDMFSQVFDQDD 130

  Fly   208 LRAYNIPMDYPTALLI-----MWNFGVVGMMSIHWQGPLRLQQGYLIFVAALMALVFIKYLPEWT 267
            ...|     |.|.:||     ::.||  |:.:......|.|.|.:::...:|:::.:::..|..|
 Worm   131 NNQY-----YMTIVLIVVPTVVYGFG--GIYAFFSNSSLILHQIFVVTNCSLISVFYLRVFPSKT 188

  Fly   268 AWAVLAAISIWDLIAVLSPRGPLRILVETAQERNEQIFPALIYSSTVVYALVNTVTPQQSQATAS 332
            .|.||..:..|||.|||:|.|||:.:.|.|.:.::.:...:::|:            .:.:.||.
 Worm   189 TWFVLWIVLFWDLFAVLAPMGPLKKVQEKASDYSKCVLNLIMFSA------------NEKRLTAG 241

  Fly   333 SSPSSSN---STTTTRA--------TQNSLASPEAAAASGQRTGNSHPRQNQRDDGSVLATEGMP 386
            |:...:|   .:|..|.        |:......|......||....:|.....:...::..|..|
 Worm   242 SNQEETNEGEESTIRRTVKQTIEYYTKREAQDDEFYQKIRQRRAAINPDSVPTEHSPLVEAEPSP 306

  Fly   387 LVTFKSN----LRGNAEAAGFTQEWSANLSERVARRQIEVQSTQS-------------GNAQRSN 434
            :...:.|    |..:......|...|:|||...:...:......:             .|:..:|
 Worm   307 IELKEKNSTEELSDDESDTSETSSGSSNLSSSDSSTTVSTSDISTAEECDQKEWDDLVSNSLPNN 371

  Fly   435 EYRTVTAPDQNHPDGQEERGIKLGLGDFIFYSVLVGKASSYGDWTTTIACFVAILIGLCLTLLLL 499
            :.|..||.|..: ||:.   ::||.|||:|||:|:|:|::.|.....|:..:.||.||.:||.:.
 Worm   372 DKRPATAADALN-DGEV---LRLGFGDFVFYSLLIGQAAASGCPFAVISAALGILFGLVVTLTVF 432

  Fly   500 AIWRKALPALPISITFGLIFCFATSAVVKPFMEDL 534
            :......||||:.:..| .||:.:|..   |.|.|
 Worm   433 STEESTTPALPLPVICG-TFCYFSSMF---FWEQL 463

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PsnNP_001262111.1 Presenilin 98..531 CDD:279427 111/475 (23%)
spe-4NP_492095.1 Presenilin 13..464 CDD:279427 115/485 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2736
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S3257
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D797738at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10202
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.870

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