DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Las and lias

DIOPT Version :9

Sequence 1:NP_524183.2 Gene:Las / 40259 FlyBaseID:FBgn0029158 Length:377 Species:Drosophila melanogaster
Sequence 2:XP_031755010.1 Gene:lias / 496674 XenbaseID:XB-GENE-942448 Length:372 Species:Xenopus tropicalis


Alignment Length:340 Identity:231/340 - (67%)
Similarity:276/340 - (81%) Gaps:2/340 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 EEIRERLAKGPNFHDFVQNPDNTRNEWEQYDGKLRREKGEEQRLRLPPWLKTTIPVGKNYAKIKA 92
            :|.:|.:..||:..||:......::.|..|.|.|:|.|||  |||||||::|.||:||||.|:|.
 Frog    33 DEKKELIKNGPDLQDFLSGELTDKSSWAAYKGNLKRLKGE--RLRLPPWVRTEIPMGKNYNKLKN 95

  Fly    93 QMRELKLSTVCEEARCPNIGECWGGGEHGTQTATIMLMGDTCTRGCRFCSVKTARKPPPLDVNEP 157
            .:|.|.|.|||||||||||||||||||:||.||||||||||||||||||||||||.|||||.:||
 Frog    96 TLRNLNLHTVCEEARCPNIGECWGGGEYGTATATIMLMGDTCTRGCRFCSVKTARNPPPLDPDEP 160

  Fly   158 VNTATAIASWGLDYIVLTSVDRDDLPDGGSEHIAETVREIKARNSNIFVECLVPDFRGNLECVKT 222
            .|||.|||.|||||:|||||||||:.|||:||||:||..:|.||..|.:|||.|||||||:.|:|
 Frog   161 FNTAKAIADWGLDYVVLTSVDRDDISDGGAEHIAKTVSLLKERNQTILIECLTPDFRGNLKAVET 225

  Fly   223 IANSGLDVYAHNIETVEKLTPYVRDRRAHYRQTLQVLTEAKRFNPNLITKSSIMLGLGETDEEIE 287
            :|.|||||||||:|||..|..:|||.||::.|::.||..||...|.||:|:|||||||||||:|.
 Frog   226 VAGSGLDVYAHNVETVPALQRHVRDPRANFDQSVNVLKHAKNVRPELISKTSIMLGLGETDEQIY 290

  Fly   288 NTLKDLREAGVDCVTLGQYMQPTNKHLKVIEYVTPEKFKHWEERGNELGFLYTASGPLVRSSYKA 352
            :|:|.||||||||:|||||||||.:||||.||:||||||:||:.|||||||||||||||||||||
 Frog   291 STMKALREAGVDCLTLGQYMQPTKRHLKVEEYITPEKFKYWEKVGNELGFLYTASGPLVRSSYKA 355

  Fly   353 GEFFITSILENRKKR 367
            ||||:.:::|.||.:
 Frog   356 GEFFLKNLIERRKTK 370

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LasNP_524183.2 LIAS_N 3..108 CDD:293486 39/79 (49%)
PLN02428 19..368 CDD:215236 231/340 (68%)
Radical_SAM 131..307 CDD:100105 123/175 (70%)
liasXP_031755010.1 PLN02428 37..371 CDD:215236 230/336 (68%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 233 1.000 Domainoid score I2355
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H4997
Inparanoid 1 1.050 490 1.000 Inparanoid score I1390
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D464271at33208
OrthoFinder 1 1.000 - - FOG0003202
OrthoInspector 1 1.000 - - oto103730
Panther 1 1.100 - - LDO PTHR10949
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2153
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.160

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