DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG13248 and SAM3

DIOPT Version :9

Sequence 1:NP_649219.1 Gene:CG13248 / 40254 FlyBaseID:FBgn0036984 Length:669 Species:Drosophila melanogaster
Sequence 2:NP_015049.1 Gene:SAM3 / 855854 SGDID:S000006195 Length:587 Species:Saccharomyces cerevisiae


Alignment Length:603 Identity:108/603 - (17%)
Similarity:204/603 - (33%) Gaps:183/603 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 PLNRCLNTFDIALLGIGHMVGAGIYVLTG-TVAKEMAGP-GIILSFILAGFISMLAALCYAEFGT 96
            |..:.|:...:.::.||..:|.|:::..| ::|   :|| .:::.|:|.|..........||...
Yeast    72 PYQKVLSQRHLTMIAIGGTLGTGLFIGLGYSLA---SGPAALLIGFLLVGTSMFCVVQSAAELSC 133

  Fly    97 RVPKAGSAYVYTYISMGEFWAFVIGWNILL-------EHMLGAASVARAWSGYVDSMLGGWIGNT 154
            :.|.:||...:....:.|...|.:..|..|       ..::|.|.....|:..|:..:  |    
Yeast   134 QFPVSGSYATHVSRFIDESVGFTVATNYALAWLISFPSELIGCALTISYWNQTVNPAV--W---- 192

  Fly   155 TLELTGGIHEPGLAQYPDVLAFLVCIVYAAALAGGVKATAVFNSLLTLVNIAVMVLVISVGF--- 216
                              |..|.|.|:.....  ||:..|.....|:::.:..:.:.|.:|.   
Yeast   193 ------------------VAIFYVFIMVLNLF--GVRGFAETEFALSIIKVIAIFIFIIIGIVLI 237

  Fly   217 --------WYADGKNWSEAEGGFLPYGVGGVIAGAATCFYAFVGFDSIATSGEEAKNPSVSIPVA 273
                    .|...|.|.: .|.|.......:.....:..::|.|.:.:..:..|:||.| :|..|
Yeast   238 AGGGPNSTGYIGAKYWHD-PGAFAKPVFKNLCNTFVSAAFSFGGSELVLLTSTESKNIS-AISRA 300

  Fly   274 TVISLFVVTVGYILVSAALTLMIPISEINPAASLPEAFGQLNLSWAKYLISIGALCGMTTTLLGS 338
            ...:.:.:.:.||.....:..::|.::                                      
Yeast   301 AKGTFWRIAIFYITTVVIIGCLVPYND-------------------------------------- 327

  Fly   339 LFALPRCMYAMASDGLLFSCFGKINPTTQVPLLNLVVSGVMSACLALVFDLAKLVEFMSIGTLLA 403
                ||.:....|:.:..|.|          ::.|..:|.|.         ||:..||::..|:|
Yeast   328 ----PRLLSGSNSEDVSASPF----------VIALSNTGSMG---------AKVSNFMNVVILVA 369

  Fly   404 YTIVSASVIILRYRPMERIHTTIRVPAVAGSPDDDDDDDEDVASQSSMDTSSPTSEMIEEVLAGR 468
            ...|..|.:....|.::.:..:.::|:|.                |.||..            ||
Yeast   370 VVSVCNSCVYASSRLIQALGASGQLPSVC----------------SYMDRK------------GR 406

  Fly   469 LKAQFRCLEPLLGRFEPGSVVSVAVM--------LFIFLSFAICVELKVSWTQLYTGTWWALIIY 525
                     ||:|....|:...:..:        :|.:| ||:|     |.:..:|   |..|..
Yeast   407 ---------PLVGIGISGAFGLLGFLVASKKEDEVFTWL-FALC-----SISSFFT---WFCICM 453

  Fly   526 GFIIFAAGTCVAVIAVHNQNTRGLIFKVPLVPFVPALGIFCNILLM---VHLDAV---------T 578
            ..|.|.    :|:.|....|.. :.:|..|..:...||...|.||:   :::.|.         .
Yeast   454 SQIRFR----MALKAQGRSNDE-IAYKSILGVYGGILGCVLNALLIAGEIYVSAAPVGSPSSAEA 513

  Fly   579 WVRFFVWVCIGMVVYFLY 596
            :..:.:.:.|.:||||.:
Yeast   514 FFEYCLSIPIMIVVYFAH 531

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13248NP_649219.1 2A0303 32..603 CDD:273330 108/603 (18%)
AA_permease_C 551..601 CDD:290617 13/58 (22%)
SAM3NP_015049.1 2A0310 74..551 CDD:273334 107/601 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157345685
Domainoid 1 1.000 76 1.000 Domainoid score I2106
eggNOG 1 0.900 - - E2759_KOG1286
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 90 1.000 Inparanoid score I1545
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53617
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.800

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