DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG13248 and slc7a6

DIOPT Version :10

Sequence 1:NP_649219.1 Gene:CG13248 / 40254 FlyBaseID:FBgn0036984 Length:669 Species:Drosophila melanogaster
Sequence 2:NP_001017197.1 Gene:slc7a6 / 549951 XenbaseID:XB-GENE-963214 Length:514 Species:Xenopus tropicalis


Alignment Length:406 Identity:92/406 - (22%)
Similarity:178/406 - (43%) Gaps:35/406 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 PTDVMETPLNRCLNTFDIALLGIGHMVGAGIYVLTGTVAKEMAGPGI-ILSFILAGFISMLAALC 90
            |.|.|:  |.:.::..:...|.:|:|:|:||:|....|....|..|: ::.:.|.|..|::.|||
 Frog    30 PQDTMQ--LKKEISLLNGVSLIVGNMIGSGIFVSPKGVLIYSASYGLSLILWSLGGIFSVIGALC 92

  Fly    91 YAEFGTRVPKAGSAYVYTYISMGEFWAFVIGW-NILLEHMLGAASVARAWSGYVDSMLGGWIGNT 154
            |||.||.:.|:|::|.|...:.|:|.||:..| ::|:......|.:|..::.|            
 Frog    93 YAELGTTIKKSGASYAYILEAFGDFVAFIRLWTSLLIIEPTSQAVIAITFANY------------ 145

  Fly   155 TLELTGGIHEPGLAQ-YPDVLA---------FLVCIVYAAALAGGVKATAVFNSLLTLVNIAVMV 209
                   :.:|.... ||..:|         .|:..:..|.:..|.:...:|.....:..||:::
 Frog   146 -------LVQPVFPSCYPPYMASRLIAAACVCLITFINCAYVKWGTRVQDLFTYAKVIALIAIII 203

  Fly   210 LVISVGFWYADGKNWSEAEGGFLPYGVGGVIAGAATCFYAFVGFDSIATSGEEAKNPSVSIPVAT 274
            ..| |.......:|:.::..| ..:..|.:..|..:..:::.|:|::....||.|||..::|::.
 Frog   204 TGI-VKLSQGQTENFEDSFAG-SSWDAGEISLGLYSALFSYSGWDTLNFVTEEIKNPERNLPLSI 266

  Fly   275 VISLFVVTVGYILVSAALTLMIPISEINPAASLPEAFGQLNLSWAKYLISIGALCGMTTTLLGSL 339
            .||:.:||:.|||.:.|...::..:.:..:.::...|..:......:.|.:.........|..|:
 Frog   267 GISMPLVTIIYILTNVAYYTVLDFNAVVASEAVAVTFADMVYGVFSWTIPVAVALSCFGGLNSSI 331

  Fly   340 FALPRCMYAMASDGLLFSCFGKINPTTQVPLLNLVVSGVMSACLALVFDLAKLVEFMSIGTLLAY 404
            .|..|..:..|.:|.|......|:.....|:..|:.:.|.:.....|.|:.:|:.:.|.......
 Frog   332 LAASRLFFVGAREGHLPDMLCLIHQERFTPVPALLFNCVATLIYLAVKDVFQLINYYSFSYWFFV 396

  Fly   405 TIVSASVIILRYRPME 420
            .:..|..|.||.:..|
 Frog   397 GLSIAGQIYLRIKKPE 412

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CG13248NP_649219.1 2A0303 32..603 CDD:273330 89/401 (22%)