DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG13248 and sbm

DIOPT Version :9

Sequence 1:NP_649219.1 Gene:CG13248 / 40254 FlyBaseID:FBgn0036984 Length:669 Species:Drosophila melanogaster
Sequence 2:NP_727785.1 Gene:sbm / 32397 FlyBaseID:FBgn0030574 Length:541 Species:Drosophila melanogaster


Alignment Length:580 Identity:123/580 - (21%)
Similarity:221/580 - (38%) Gaps:142/580 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 MNRTKSVPTDVMETPLNRCLNTFDIALLGIGHMVGAGIYVLTGTVAKEMAGPGIILSFIL---AG 81
            :.|..|....|:.  |.|.|..|....|.:|.|:|:||:|....:.......|:  |||:   .|
  Fly    67 LERNGSTQNHVVH--LERRLGLFSGVALIVGTMIGSGIFVSPSGLLVRTGSVGV--SFIIWLACG 127

  Fly    82 FISMLAALCYAEFGTRVPKAGSAYVYTYISMGEFWAFVIGW-NILLEHMLGAASVARAWSGY-VD 144
            .:|:|.||.|||.||....:|:.:.|...:.|...||:..| :.|:......|.:..:::.| |:
  Fly   128 VLSLLGALAYAELGTMNTSSGAEWAYFMDAYGPAPAFLFSWVSTLVLKPSQMAIICLSFAQYAVE 192

  Fly   145 SMLGGWIGNTTLELTGGIHEPGLAQYPDVLAFLVCIV-------YAAALAGGVKATAVFNSLLTL 202
            :.:      |..:...|:.:         :..||.||       |:..|...|:      ::.|.
  Fly   193 AFV------TECDPPRGVVK---------MVALVAIVMILFVNCYSVNLGMAVQ------NVFTA 236

  Fly   203 VNIAVMVLVISVGFW---YADGKNWSEAEGGFLPYGVGGVIAGAATCFYAFVGFDSIATSGEEAK 264
            ..:..:|:||..|.|   ..:.::.|.|..|.:| .||.:.....|..:|:.|::::....||.|
  Fly   237 AKLVAVVVVICGGAWKLMQGNTQHLSNAFNGPMP-NVGAIATAFYTGLWAYDGWNNLNYVTEEIK 300

  Fly   265 NPSVSIPVATVISLFVVTVGYILVSAALTLMIPISEINPAASLPEAFGQLNLSWAKYLISIGALC 329
            |||.::|.:.:|.:.:||:.|.|::.:....:...|:..:.::...||...|....:|:.:....
  Fly   301 NPSKNLPRSIIIGIPLVTLCYALINISYLAAMSPQEMIESEAVAVTFGNRILGALAWLMPLSVTI 365

  Fly   330 GMTTTLLGSLFALPRCMYAMASDGLLFSCFGKINPTTQVPLLNLVVSGVMSACLALVFDLAKLVE 394
            ....:..|:|||..|..:|.:.:|.|......::.....|...|:...::::.:.|...:..|::
  Fly   366 STFGSANGTLFAAGRLCFAASREGHLLDILSYVHVRRLTPAPGLIFHSLIASAMVLHGTIDSLID 430

  Fly   395 FMSIGTLLAYTIVSASVIILRY------RPMERIHTTIRVPAVAGSPDDDDDDDEDVASQSSMDT 453
            |.|....:.|.....::|::||      ||       .:||.:.                     
  Fly   431 FFSFTAWIFYGGAMLALIVMRYTKPNYPRP-------YKVPIII--------------------- 467

  Fly   454 SSPTSEMIEEVLAGRLKAQFRCLEPLLGRFEPGSVVSVAVMLFIFLSFAICVELKVSWTQLYTGT 518
              |...::..|        :....|:   ||...|..:..:||||                    
  Fly   468 --PVVVLVISV--------YLVAAPI---FETPRVEYLYALLFIF-------------------- 499

  Fly   519 WWALIIYGFIIFAAGTCVAVIAVHNQNTRGLIFKVPLVP------FVPALGIFCNILLMV 572
                                        .||||.||.|.      |:..:.:|..:||.|
  Fly   500 ----------------------------AGLIFYVPFVKLGMTPRFMNKVTLFFQLLLEV 531

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13248NP_649219.1 2A0303 32..603 CDD:273330 120/568 (21%)
AA_permease_C 551..601 CDD:290617 9/28 (32%)
sbmNP_727785.1 2A0308 53..532 CDD:273332 123/580 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45466565
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.