DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoBTB and RAC3

DIOPT Version :9

Sequence 1:NP_001262107.1 Gene:RhoBTB / 40249 FlyBaseID:FBgn0036980 Length:783 Species:Drosophila melanogaster
Sequence 2:NP_001190916.1 Gene:RAC3 / 829654 AraportID:AT4G35020 Length:198 Species:Arabidopsis thaliana


Alignment Length:219 Identity:74/219 - (33%)
Similarity:106/219 - (48%) Gaps:38/219 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 VKCVLVGDTAVGKTRLICARACNKHVSLSQLLSTHVPTVWAIDQYRIYKDVLERSWEVVDGVNVS 78
            :|||.|||.|||||.|:.:...|      ...:.:||||:  |.:        .:..:|||..::
plant     7 IKCVTVGDGAVGKTCLLISYTSN------TFPTDYVPTVF--DNF--------SANVIVDGNTIN 55

  Fly    79 LRLWDTFG--DHDKDRRFAYGRSDVVLLCFSIASPISLRNCKMMWYPEIRRFCPDVPVILVGCKN 141
            |.||||.|  |:::.|..:|..:||.||.||:.|..|..|....|.||:|.:.|.||:||||.|.
plant    56 LGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLVSKASYENVSKKWVPELRHYAPGVPIILVGTKL 120

  Fly   142 DLRYMYRDENYLSYFGEKGTFVRAALKSDLVMPDEARAVAKELGV-AYYETSVFTYFGVNEVFEN 205
            ||    ||:.  .:|.|....|.       :...:...:.|.:|. ||.|.|..|...|..||:.
plant   121 DL----RDDK--QFFAEHPGAVP-------ISTAQGEELKKLIGAPAYIECSAKTQQNVKAVFDA 172

  Fly   206 AIRSALIARRQQRFWMTNLKKVQK 229
            ||:..|...:.::      ||.:|
plant   173 AIKVVLQPPKNKK------KKKRK 190

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoBTBNP_001262107.1 RhoBTB 12..210 CDD:133275 70/198 (35%)
RHO 16..211 CDD:197554 69/197 (35%)
BTB <392..446 CDD:295341
BTB 481..575 CDD:279045
BTB 485..582 CDD:197585
RAC3NP_001190916.1 Rop_like 6..178 CDD:206705 70/199 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0393
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24072
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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