DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoBTB and rnd3b

DIOPT Version :9

Sequence 1:NP_001262107.1 Gene:RhoBTB / 40249 FlyBaseID:FBgn0036980 Length:783 Species:Drosophila melanogaster
Sequence 2:NP_001002591.1 Gene:rnd3b / 436864 ZFINID:ZDB-GENE-040718-331 Length:223 Species:Danio rerio


Alignment Length:204 Identity:69/204 - (33%)
Similarity:96/204 - (47%) Gaps:42/204 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 HQELVKC--VLVGDTAVGKTRLICARACNKHVSLSQLLSTHVPTVWAIDQYRIYKDVLERSWEVV 72
            |...:||  |:||||..|||.|:...|      .......:||||:  :.|       ..|:| |
Zfish     3 HHHDLKCKIVVVGDTQCGKTSLLNVFA------KDSFPENYVPTVF--ENY-------TASFE-V 51

  Fly    73 DGVNVSLRLWDTFGD--HDKDRRFAYGRSDVVLLCFSIASPISLRNCKMMWYPEIRRFCPDVPVI 135
            |.:.|.|.||||.|.  :|..|..:|..:|.||:||.|..|.:|.|....|..||..|||:..::
Zfish    52 DTLRVELSLWDTSGSPYYDNVRPLSYPDADAVLICFDIGRPETLENVLRKWKGEIEEFCPNTKIL 116

  Fly   136 LVGCKNDLRYMYRDENYLSYFGEKGTFVRAALKSDLVMP-DEARAVAKELGVAYYETSVFTYFGV 199
            |||||:|||            .:..|||:  |.:|:... |:...:||.:...|.|.|.      
Zfish   117 LVGCKSDLR------------ADLATFVQ--LSNDIPSSYDQGSNMAKLISAPYIECSA------ 161

  Fly   200 NEVFENAIR 208
             :..||::|
Zfish   162 -QQSENSVR 169

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoBTBNP_001262107.1 RhoBTB 12..210 CDD:133275 68/202 (34%)
RHO 16..211 CDD:197554 67/198 (34%)
BTB <392..446 CDD:295341
BTB 481..575 CDD:279045
BTB 485..582 CDD:197585
rnd3bNP_001002591.1 P-loop_NTPase 4..182 CDD:304359 68/203 (33%)
RHO 11..182 CDD:197554 66/196 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0393
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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