DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoBTB and Miro

DIOPT Version :9

Sequence 1:NP_001262107.1 Gene:RhoBTB / 40249 FlyBaseID:FBgn0036980 Length:783 Species:Drosophila melanogaster
Sequence 2:NP_001262895.1 Gene:Miro / 42845 FlyBaseID:FBgn0039140 Length:673 Species:Drosophila melanogaster


Alignment Length:517 Identity:99/517 - (19%)
Similarity:162/517 - (31%) Gaps:197/517 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 VKCVLVGDTAVGKTRLICARACNKHVSLSQLLSTHVPTVWAIDQYRIYKDVLERSWEVVDGVNVS 78
            |:.:||||..||||.||.:           |:|...|           ::|..|:.|:....||:
  Fly    12 VRILLVGDAGVGKTSLILS-----------LVSEEYP-----------EEVPPRAEEITIPANVT 54

  Fly    79 LRLWDT----FG--DHDKDRRFA-YGRSDVVLLCFSIASPISLRNCKMMWYPEIRRFC-PDV--- 132
            .....|    |.  :..:|...| ..::.||.:.:::....:|......|.|.:|..| |.:   
  Fly    55 PEQVPTSIVDFSAVEQSEDALAAEINKAHVVCIVYAVDDDDTLDRITSHWLPLVRAKCNPSLDGE 119

  Fly   133 ------------------PVILVGCKNDL-RYMYRD------ENY-------------------L 153
                              |::|||.|.|| .|...|      |:|                   :
  Fly   120 GDAEAEAEGDTQREPIRKPIVLVGNKIDLIEYSTMDSVLAIMEDYPEIESCVECSAKSLHNISEM 184

  Fly   154 SYFGEKGTF-------------VRAALKSDLV--------------------------------- 172
            .|:.:|...             :.:|.|..||                                 
  Fly   185 FYYAQKAVLHPTSPLYMMEEQELTSACKKSLVRIFKICDIDGDNLLNDYELNLFQRRCFNTPLQP 249

  Fly   173 -MPDEARAV-AKELGVAYYETSV-----------FTYFGVNEVFENAIRSALIARRQQRFWMTNL 224
             :.||.:|| .|.:....|..:|           |...|.||.....:|         ||...: 
  Fly   250 QILDEVKAVIQKNVPDGIYNDAVTLKGFLFLHCLFIQRGRNETTWAVLR---------RFGYND- 304

  Fly   225 KKVQKPLLQAPFRPPKPPPPEVTVMVGNYRQDIYNMFLSQAYTDLVLVGAGGTKFAVHRFMLAAA 289
               |..:.|...|||...||..:..:.:..|    .||...:......|.|......|: ||.:.
  Fly   305 ---QLEMCQEYLRPPLKIPPGSSTELSHRGQ----QFLIAVFERYDRDGDGALSPEEHK-MLFST 361

  Fly   290 SSIFQRLLSTELTDMGGRSSSESSMVSSTFGEATIADFNDDTEALIRYESRT----QRMWEHLKR 350
            ........||::        .:|..::.|.|..|:..:      |.|:...|    .:..|:|  
  Fly   362 CPAAPWSYSTDI--------RKSCPINETTGWVTLHGW------LCRWTLMTLIDVVKTMEYL-- 410

  Fly   351 RSSYQALPLMESKRSNDLYRELHHPVLQSIRLVHVENHRGVNGLQTIVTLSKLISPQALHQC 412
              :|....:.|    ||          ..:..:||...|.::       |:|..|.:::::|
  Fly   411 --AYLGFNVHE----ND----------SQLAAIHVTRERRID-------LAKRQSSRSVYKC 449

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoBTBNP_001262107.1 RhoBTB 12..210 CDD:133275 60/309 (19%)
RHO 16..211 CDD:197554 59/308 (19%)
BTB <392..446 CDD:295341 4/21 (19%)
BTB 481..575 CDD:279045
BTB 485..582 CDD:197585
MiroNP_001262895.1 Miro1 10..195 CDD:206680 44/204 (22%)
RHO 14..195 CDD:197554 43/202 (21%)
EF_assoc_2 247..328 CDD:285547 21/93 (23%)
EF_assoc_1 367..437 CDD:285546 18/108 (17%)
Miro2 444..620 CDD:206679 1/6 (17%)
Ras 448..602 CDD:278499 1/2 (50%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45466328
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24072
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.030

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