DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoBTB and cdc42

DIOPT Version :9

Sequence 1:NP_001262107.1 Gene:RhoBTB / 40249 FlyBaseID:FBgn0036980 Length:783 Species:Drosophila melanogaster
Sequence 2:NP_001018130.1 Gene:cdc42 / 336839 ZFINID:ZDB-GENE-030131-8783 Length:191 Species:Danio rerio


Alignment Length:211 Identity:76/211 - (36%)
Similarity:107/211 - (50%) Gaps:32/211 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 ELVKCVLVGDTAVGKTRLICARACNKHVSLSQLLSTHVPTVWAIDQYRIYKDVLERSWEVVDGVN 76
            :.:|||:|||.|||||.|:.:...||      ..|.:||||:  |.|.:        ..::.|..
Zfish     2 QTIKCVVVGDGAVGKTCLLISYTTNK------FPSEYVPTVF--DNYAV--------TVMIGGEP 50

  Fly    77 VSLRLWDTFG--DHDKDRRFAYGRSDVVLLCFSIASPISLRNCKMMWYPEIRRFCPDVPVILVGC 139
            .:|.|:||.|  |:|:.|..:|.::||.|:|||:.||.|..|.|..|.|||...||..|.:|||.
Zfish    51 YTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115

  Fly   140 KNDLRYMYRDENYLSYFGEKGTFVRAAL-KSDLVMPDEARAVAKEL-GVAYYETSVFTYFGVNEV 202
            :.|||            .:..|..:.|. |...:.|:.|..:|::| .|.|.|.|..|..|:..|
Zfish   116 QIDLR------------DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNV 168

  Fly   203 FENAIRSALIARRQQR 218
            |:.||.:||.....||
Zfish   169 FDEAILAALEPPETQR 184

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoBTBNP_001262107.1 RhoBTB 12..210 CDD:133275 72/201 (36%)
RHO 16..211 CDD:197554 71/198 (36%)
BTB <392..446 CDD:295341
BTB 481..575 CDD:279045
BTB 485..582 CDD:197585
cdc42NP_001018130.1 Cdc42 3..177 CDD:206664 72/201 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0393
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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