DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoBTB and rho1

DIOPT Version :9

Sequence 1:NP_001262107.1 Gene:RhoBTB / 40249 FlyBaseID:FBgn0036980 Length:783 Species:Drosophila melanogaster
Sequence 2:NP_594490.1 Gene:rho1 / 2541612 PomBaseID:SPAC1F7.04 Length:202 Species:Schizosaccharomyces pombe


Alignment Length:221 Identity:77/221 - (34%)
Similarity:112/221 - (50%) Gaps:30/221 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 KCVLVGDTAVGKTRLICARACNKHVSLSQLLSTHVPTVWAIDQYRIYKDVLERSWEVVDGVNVSL 79
            |.|:|||.|.|||.|:..      .|.......:||||:  :.|  ..||      .|||.:|.|
pombe     8 KLVIVGDGACGKTCLLIV------FSKGTFPEVYVPTVF--ENY--VADV------EVDGRHVEL 56

  Fly    80 RLWDTFG--DHDKDRRFAYGRSDVVLLCFSIASPISLRNCKMMWYPEIRRFCPDVPVILVGCKND 142
            .||||.|  |:|:.|..:|..|.|:|:||::.||.||.|.:..|..|:..||..:|::||.||.|
pombe    57 ALWDTAGQEDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCSSLPILLVACKAD 121

  Fly   143 LRYMYRDENYLSYFGEKGTFVRAALKSDLVMPDEARAVAKELGV-AYYETSVFTYFGVNEVFENA 206
            ||   .|...:....:        .....|..:|.:|||:::|. .|.|.|..|..||.||||:|
pombe   122 LR---NDPKIIEELSK--------TNQHPVTTEEGQAVAQKIGAYKYLECSAKTNEGVREVFESA 175

  Fly   207 IRSALIARRQQRFWMTNLKKVQKPLL 232
            .|:|::..:.:....:..||.::.:|
pombe   176 TRAAMLKHKPKVKPSSGTKKKKRCIL 201

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoBTBNP_001262107.1 RhoBTB 12..210 CDD:133275 73/197 (37%)
RHO 16..211 CDD:197554 72/197 (37%)
BTB <392..446 CDD:295341
BTB 481..575 CDD:279045
BTB 485..582 CDD:197585
rho1NP_594490.1 RhoA_like 6..180 CDD:206662 73/198 (37%)
RHO 9..182 CDD:197554 73/199 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0393
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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