DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoBTB and cdc-42

DIOPT Version :10

Sequence 1:NP_001262107.1 Gene:RhoBTB / 40249 FlyBaseID:FBgn0036980 Length:783 Species:Drosophila melanogaster
Sequence 2:NP_495598.1 Gene:cdc-42 / 174233 WormBaseID:WBGene00000390 Length:191 Species:Caenorhabditis elegans


Alignment Length:210 Identity:74/210 - (35%)
Similarity:105/210 - (50%) Gaps:30/210 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 ELVKCVLVGDTAVGKTRLICARACNKHVSLSQLLSTHVPTVWAIDQYRIYKDVLERSWEVVDGVN 76
            :.:|||:|||.|||||.|:.:...||      ..|.:||||:  |.|.:        ..::.|..
 Worm     2 QTIKCVVVGDGAVGKTCLLISYTTNK------FPSEYVPTVF--DNYAV--------TVMIGGEP 50

  Fly    77 VSLRLWDTFG--DHDKDRRFAYGRSDVVLLCFSIASPISLRNCKMMWYPEIRRFCPDVPVILVGC 139
            .:|.|:||.|  |:|:.|..:|.::||.|:|||:.:|.|..|.:..|.|||...|...|.:|||.
 Worm    51 YTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVAPASFENVREKWVPEISHHCSKTPFLLVGT 115

  Fly   140 KNDLRYMYRDENYLSYFGEKGTFVRAALKSDLVMPDEARAVAKEL-GVAYYETSVFTYFGVNEVF 203
            :.|||   .|...|....:.        |...|..|....:|||| .|.|.|.|..|..|:..||
 Worm   116 QVDLR---DDPGMLEKLAKN--------KQKPVSTDVGEKLAKELKAVKYVECSALTQKGLKNVF 169

  Fly   204 ENAIRSALIARRQQR 218
            :.||.:||...:|::
 Worm   170 DEAILAALDPPQQEK 184

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoBTBNP_001262107.1 RhoBTB 12..210 CDD:133275 71/200 (36%)
BTB1_POZ_RhoBTB 255..452 CDD:349608
BTB2_POZ_RhoBTB 475..582 CDD:349609
BACK_RHOBTB 593..669 CDD:350574
cdc-42NP_495598.1 Cdc42 3..177 CDD:206664 71/200 (36%)
Blue background indicates that the domain is not in the aligned region.

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