DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RhoBTB and Rhoq

DIOPT Version :9

Sequence 1:NP_001262107.1 Gene:RhoBTB / 40249 FlyBaseID:FBgn0036980 Length:783 Species:Drosophila melanogaster
Sequence 2:NP_663466.2 Gene:Rhoq / 104215 MGIID:1931553 Length:205 Species:Mus musculus


Alignment Length:210 Identity:70/210 - (33%)
Similarity:108/210 - (51%) Gaps:30/210 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 PHQELVKCVLVGDTAVGKTRLICARACNKHVSLSQLLSTHVPTVWAIDQYRIYKDVLERSWEVVD 73
            |...::|||:|||.|||||.|:.:.|.:      .....:||||:  |.|.:.        ..|.
Mouse     5 PGALMLKCVVVGDGAVGKTCLLMSYAND------AFPEEYVPTVF--DHYAVS--------VTVG 53

  Fly    74 GVNVSLRLWDTFG--DHDKDRRFAYGRSDVVLLCFSIASPISLRNCKMMWYPEIRRFCPDVPVIL 136
            |....|.|:||.|  |:|:.|..:|..:||.|:|||:.:|.|.:|.|..|.||::.:.|:||.:|
Mouse    54 GKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLL 118

  Fly   137 VGCKNDLRYMYRDENYLSYFGEKGTFVRAALKSDLVMPDEARAVAKELGV-AYYETSVFTYFGVN 200
            :|.:.|||   .|...|:...:        :|...|..::.:.:|||:|. .|.|.|..|..|:.
Mouse   119 IGTQIDLR---DDPKTLARLND--------MKEKPVCVEQGQKLAKEIGACCYVECSALTQKGLK 172

  Fly   201 EVFENAIRSALIARR 215
            .||:.||.:.|..::
Mouse   173 TVFDEAIIAILTPKK 187

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoBTBNP_001262107.1 RhoBTB 12..210 CDD:133275 68/200 (34%)
RHO 16..211 CDD:197554 67/197 (34%)
BTB <392..446 CDD:295341
BTB 481..575 CDD:279045
BTB 485..582 CDD:197585
RhoqNP_663466.2 Tc10 10..183 CDD:206707 68/199 (34%)
Effector region. /evidence=ECO:0000250 38..46 5/9 (56%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0393
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.