DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbbp5 and rbbp5

DIOPT Version :9

Sequence 1:NP_649209.1 Gene:Rbbp5 / 40239 FlyBaseID:FBgn0036973 Length:489 Species:Drosophila melanogaster
Sequence 2:XP_005168325.1 Gene:rbbp5 / 393215 ZFINID:ZDB-GENE-040426-886 Length:535 Species:Danio rerio


Alignment Length:504 Identity:340/504 - (67%)
Similarity:402/504 - (79%) Gaps:28/504 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MNLELLESFGQNYPEEFDGSLDCISLAVTCAFNKYGTLLAVGCNDGRIVIWDFLTRGIAKIISAH 65
            ||||||||||||||||.||:|||||:|:||.||::||||||||||||||||||||||||||||||
Zfish     1 MNLELLESFGQNYPEEADGTLDCISMALTCTFNRWGTLLAVGCNDGRIVIWDFLTRGIAKIISAH 65

  Fly    66 VHPVCSLSWTRNGHKLLSASTDNNVCIWDVLTGELEHKYRFPSPVLKVQFDPRNDNRLLVCPMRY 130
            :||||||||:|:||||:||||||.|..||||||:.:.::|||||:||:|:.||:.|::|||||:.
Zfish    66 IHPVCSLSWSRDGHKLVSASTDNIVSQWDVLTGDCDQRFRFPSPILKLQYHPRDMNKVLVCPMKS 130

  Fly   131 AAVLVEVGGT-HRCLPLDSDGDLNIVASFDRRGKHIYTGNAKGKILVLDVETFEVVASFRIIVGT 194
            |.||:.:..: |..||:|.|.|||:||:|||||::|||||||||||||:.:|.::|||||:..||
Zfish   131 APVLLTLSDSKHVVLPVDDDSDLNVVAAFDRRGEYIYTGNAKGKILVLNTDTQDLVASFRVTTGT 195

  Fly   195 SSATAVKSIEFARRGDAFLINTSDRVIRVYDSKEIITLGKDGEPEPIQKLQDLVNKTTWKKCCFS 259
            |:.||:|||||||:|..|||||:||:|||||.:||:|.|:||||||:||||||||:|.||:||||
Zfish   196 SNTTAIKSIEFARKGSCFLINTADRIIRVYDGREILTCGRDGEPEPMQKLQDLVNRTPWKRCCFS 260

  Fly   260 GDGEYICAGSARQHALYIWEKSIGNLVKILHGTKGELLLDVVWHPVRPIIASISSGLVSIWAQNQ 324
            ||||||.||||||||||||||||||||||||||:|||||||.||||||||||||||:||||||||
Zfish   261 GDGEYIVAGSARQHALYIWEKSIGNLVKILHGTRGELLLDVAWHPVRPIIASISSGVVSIWAQNQ 325

  Fly   325 VENWSAFAPDFKELDENVEYEERESEFDIADEDKS--VDLNADAQQDEEIEVDVQKVEPVAAFCS 387
            |||||||||||||||||||||||||||||.|||||  ....|||.:||  ||||..|:|:.||||
Zfish   326 VENWSAFAPDFKELDENVEYEERESEFDIEDEDKSEPEQTGADAAEDE--EVDVTSVDPIPAFCS 388

  Fly   388 SDEEGEDENALQFLPMAPEVEDPEDGWTG------------QDGLEPSAVMLGHMEPHDYEDDIM 440
            ||||.||..||.:||:||||||||:...|            .||...:..  |..:.|...|.  
Zfish   389 SDEELEDYKALLYLPIAPEVEDPEENPFGPPPDATAQNASTDDGSTHTGP--GDKKRHPSADG-- 449

  Fly   441 ASKRRRMQLYDVSLPDAPTDETHPLISSKA-SKDKQQPVGGKKAAGRTK 488
            |..:::::...:.|...|:||.|||:..|. ||.|      ||||||.|
Zfish   450 APPKKKIRTTTIELQGVPSDEVHPLLGVKGDSKSK------KKAAGRPK 492

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbbp5NP_649209.1 WD40 28..321 CDD:295369 219/293 (75%)
WD40 repeat 29..64 CDD:293791 31/34 (91%)
WD40 <30..340 CDD:225201 237/310 (76%)
WD40 repeat 70..107 CDD:293791 24/36 (67%)
WD40 repeat 110..147 CDD:293791 17/37 (46%)
WD40 repeat 153..189 CDD:293791 25/35 (71%)
WD40 repeat 200..245 CDD:293791 32/44 (73%)
WD40 repeat 253..290 CDD:293791 34/36 (94%)
WD40 repeat 297..320 CDD:293791 20/22 (91%)
rbbp5XP_005168325.1 WD40 repeat 29..64 CDD:293791 31/34 (91%)
WD40 30..322 CDD:295369 218/291 (75%)
WD40 <38..321 CDD:225201 212/282 (75%)
WD40 repeat 70..115 CDD:293791 30/44 (68%)
WD40 repeat 154..190 CDD:293791 25/35 (71%)
WD40 repeat 201..246 CDD:293791 32/44 (73%)
WD40 repeat 254..291 CDD:293791 34/36 (94%)
WD40 repeat 298..321 CDD:293791 20/22 (91%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170576219
Domainoid 1 1.000 499 1.000 Domainoid score I343
eggNOG 1 0.900 - - E1_KOG1273
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3709
Inparanoid 1 1.050 670 1.000 Inparanoid score I716
OMA 1 1.010 - - QHG54438
OrthoDB 1 1.010 - - D1001705at2759
OrthoFinder 1 1.000 - - FOG0005106
OrthoInspector 1 1.000 - - oto39187
orthoMCL 1 0.900 - - OOG6_103359
Panther 1 1.100 - - LDO PTHR44040
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1420
SonicParanoid 1 1.000 - - X3627
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1615.800

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