DRSC/TRiP Functional Genomics Resources

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Protein Alignment alphaSnap and snap-1

DIOPT Version :9

Sequence 1:NP_524180.1 Gene:alphaSnap / 40233 FlyBaseID:FBgn0250791 Length:292 Species:Drosophila melanogaster
Sequence 2:NP_505099.2 Gene:snap-1 / 179193 WormBaseID:WBGene00017016 Length:295 Species:Caenorhabditis elegans


Alignment Length:296 Identity:150/296 - (50%)
Similarity:210/296 - (70%) Gaps:5/296 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGDNEQKALQLMAEAEKKLTQQKGFLGSLFGGSNKVEDAIECYQRAGNMFKMSKNWTKAGECFCE 65
            |.|||.||.|.|||..|||:...|||..:|||.....:|.:.:.:.||:|||:|||..||:.|.|
 Worm     1 MSDNEAKARQKMAEGRKKLSGGGGFLNRMFGGGGSNAEAADLFIQGGNLFKMAKNWQAAGDAFLE 65

  Fly    66 AATLHARAG-SRHDAGTCYVDASNCYKKVDVESAVNCLMKSIDIYTDMGRFTMAAKHHQSIAEMY 129
            ||..:|:.| |:||..|.|.:|:||::|:..|.||.||.|:.:|||||||||||||:|.||||:|
 Worm    66 AAEFYAKNGDSKHDCATQYAEAANCFRKIQPERAVQCLEKTSEIYTDMGRFTMAAKNHVSIAELY 130

  Fly   130 ESDPNNLAKSIQHYEQAADYFKGEESVSSANKCMLKVAQYAAQLEDYEKAISIYEQVAASSLESS 194
            |::..:..:.::||:|||||:||||..|||:||::|||.|:|:||.|.:||:::|::|....:.|
 Worm   131 ETELPDKEQCVKHYQQAADYYKGEEQKSSASKCLVKVAMYSAELEKYSQAIAVFEEIAFFEADHS 195

  Fly   195 LLKYSAKEYFFRAALCHLSVDLLNAQHAIEKYAQQYPAFQDSREFKLIKVLCENLEEQNIEGFTE 259
            .|||:||.:||:|.||||.:|.:|.|.|::||....|:|.||||.|.:|.|...::|:..|.|||
 Worm   196 TLKYAAKGHFFQALLCHLCIDPINTQQALQKYENASPSFTDSRECKFVKELLAAIDEKKEETFTE 260

  Fly   260 AVKDYDSISRLDQWYTTILLRIKK---AADEDPDLR 292
            .|.::|.|||||.|.|::||::|:   ..||| |||
 Worm   261 CVANFDKISRLDNWSTSLLLKVKRTIEGEDED-DLR 295

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alphaSnapNP_524180.1 SNAP 7..284 CDD:276937 140/280 (50%)
SNAP 7..284 CDD:291599 140/280 (50%)
TPR repeat 35..72 CDD:276937 15/36 (42%)
TPR repeat 76..112 CDD:276937 17/35 (49%)
TPR repeat 115..152 CDD:276937 20/36 (56%)
TPR repeat 156..192 CDD:276937 17/35 (49%)
snap-1NP_505099.2 SNAP 7..287 CDD:291599 140/279 (50%)
SNAP 7..286 CDD:276937 140/278 (50%)
TPR repeat 36..72 CDD:276937 15/35 (43%)
TPR repeat 77..113 CDD:276937 17/35 (49%)
TPR repeat 116..153 CDD:276937 20/36 (56%)
TPR repeat 157..193 CDD:276937 17/35 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160166909
Domainoid 1 1.000 295 1.000 Domainoid score I805
eggNOG 1 0.900 - - E1_KOG1586
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2839
Inparanoid 1 1.050 305 1.000 Inparanoid score I1588
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53796
OrthoDB 1 1.010 - - D1191204at2759
OrthoFinder 1 1.000 - - FOG0001605
OrthoInspector 1 1.000 - - oto17505
orthoMCL 1 0.900 - - OOG6_101315
Panther 1 1.100 - - LDO PTHR13768
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1307
SonicParanoid 1 1.000 - - X1012
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1615.840

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