DRSC/TRiP Functional Genomics Resources

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Protein Alignment polo and AMPKalpha

DIOPT Version :10

Sequence 1:NP_524179.2 Gene:polo / 40232 FlyBaseID:FBgn0003124 Length:576 Species:Drosophila melanogaster
Sequence 2:NP_477313.1 Gene:AMPKalpha / 43904 FlyBaseID:FBgn0023169 Length:582 Species:Drosophila melanogaster


Alignment Length:346 Identity:100/346 - (28%)
Similarity:177/346 - (51%) Gaps:22/346 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 GKGGFAKC----YEIIDVETDDVFAGKIVSKKLMIKHNQKEKTAQEITIHRSLNHPNIVKFHNYF 92
            |.|.|.|.    ::|..|:.    |.||::::.:...:...|..:||...:...||:|:|.:...
  Fly    35 GTGTFGKVKIGEHQITRVKV----AVKILNRQKIKSLDVVGKIRREIQNLKLFRHPHIIKLYQVI 95

  Fly    93 EDSQNIYIVLELCKKRSMMELHKRRKSITEFECRYYIYQIIQGVKYLHDNRIIHRDLKLGNLFLN 157
            ....:|::::|......:.:...:...:.|.:.|.:..|||.||.|.|.:.|:|||||..||.|:
  Fly    96 STPSDIFMIMEYVSGGELFDYIVKHGKLQEHQARRFFQQIISGVDYCHRHMIVHRDLKPENLLLD 160

  Fly   158 DLLHVKIGDFGLATRIEYEGERKKTLCGTPNYIAPEILTKKGHSF-EVDIWSIGCVMYTLLVGQP 221
            ..:||||.||||:..: .:||..:|.||:|||.|||:::.|.::. ||||||.|.::|.||.|..
  Fly   161 HNMHVKIADFGLSNMM-LDGEFLRTSCGSPNYAAPEVISGKLYAGPEVDIWSCGVILYALLCGTL 224

  Fly   222 PFETKTLKDTYSKIKKCEYRVPSYLRKPAADMVIAMLQPNPESRPAIGQLLNFEFLKGSKVPMFL 286
            ||:.:.:...:.|||...:.:|.||.|...::|..|||.:|..|..|.::...|:.: ..:|.:|
  Fly   225 PFDDEHVPTLFRKIKSGIFPIPEYLNKQVVNLVCQMLQVDPLKRANIEEIKKHEWFQ-KDLPAYL 288

  Fly   287 -PSSCLTMAPRIGSNDTIEDSMHRKPLMEMNGIRPDDTRLESTFLKANLHDAITASAQVCRHSED 350
             |||       |..:..:.|:.....:....|::  :|.:.::.|..:.||.:..:..:...::.
  Fly   289 FPSS-------IEQDSNVIDTYAVAEVCTKFGVK--ETEVHNSLLSGDPHDQLAIAYHLIIDNKR 344

  Fly   351 YRSDIESLYQQLTN-LINGKP 370
            :..|..:...::.| .:.|.|
  Fly   345 FADDAANQINEINNFFVAGSP 365

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
poloNP_524179.2 STKc_PLK 23..277 CDD:271001 84/249 (34%)
POLO_box_1 388..475 CDD:240561
POLO_box_2 490..570 CDD:240560
AMPKalphaNP_477313.1 STKc_AMPK_alpha 25..280 CDD:270981 84/249 (34%)
UBA_AID_AMPKalpha 297..360 CDD:270521 8/64 (13%)
AMPKA_C 457..580 CDD:213378
Blue background indicates that the domain is not in the aligned region.

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