DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdgC and PPZ2

DIOPT Version :9

Sequence 1:NP_536738.3 Gene:rdgC / 40224 FlyBaseID:FBgn0265959 Length:746 Species:Drosophila melanogaster
Sequence 2:NP_010724.1 Gene:PPZ2 / 852046 SGDID:S000002844 Length:710 Species:Saccharomyces cerevisiae


Alignment Length:594 Identity:150/594 - (25%)
Similarity:237/594 - (39%) Gaps:124/594 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 TDDDGKRRSSSVEDASSCR------SSEIERVGASMQTLGPNG--QPQSSAAQTSTRASSLLQ-- 64
            ||||..|.....|..|..:      ||..:| |:....|..:.  ||:......|:.:|.|.:  
Yeast   161 TDDDDDRGDDGGESPSMAKVTRINTSSSADR-GSKRTPLRRHNSLQPEKGVTGFSSTSSKLRRRS 224

  Fly    65 --------------------LFQRRGWCKH--FRKPLRGMSASRAEKTIRAAIFIQKWYRRHQ-A 106
                                .|..|. ..|  .||...|.:.:.|..|           ..|. |
Yeast   225 DNTLPASYPLNAEAGGNGSDYFSNRS-NSHASSRKSSFGSTGNTAYST-----------PLHSPA 277

  Fly   107 RREMQRRCNWQIFQNLE-----------------YASEQDQAELYKFFNDLIKH------MPQAA 148
            .|:|..|.|.....|:.                 .||...:.|....:..|...      .|:..
Yeast   278 LRKMSSRDNDDSGDNVNGRGTSPIPNLNIDKPSPSASSASKREYLSAYPTLAHRDSSSSLSPRGK 342

  Fly   149 GRKNQYQGSA----HVSVLDDKDDLVE------EFGDIVNAKIEL----PIRKNHID----LLID 195
            |:::....|:    :||......|.|.      :.|...|..:|:    |:|...||    .|:|
Yeast   343 GQRSSSSSSSSQRIYVSPPSPTGDFVHGSCADGDNGSRTNTMVEMKRKKPVRPVDIDEIIQRLLD 407

  Fly   196 V-FRKKRGNRLHPKYVALILREAAKSLKQLPNISPVSTAVSQQVTVCGDLHGKLDDLLVVLHKNG 259
            . :..||...:..|...:|  :.....::|....|....:|..|.:.||:||:..|||.:..|.|
Yeast   408 AGYAAKRTKNVCLKNSEII--QICHKARELFLAQPALLELSPSVKIVGDVHGQYADLLRLFTKCG 470

  Fly   260 LPSSSNPYVFNGDFVDRGKRGLEVLLLLLSLYLAFPNAVFLNRGNHEDSVMNARYGFIREVESKY 324
            .|..:| |:|.||:|||||:.||.:||||...:.:|...||.|||||.:.:...|||..|.:.:.
Yeast   471 FPPMAN-YLFLGDYVDRGKQSLETILLLLCYKIKYPENFFLLRGNHECANVTRVYGFYDECKRRC 534

  Fly   325 PRNHKRILAFIDEVYRWLPLGSVLNSRVLIVHGGFSDSTSLDLIKSIDRGKYVSILRPPLTDGEP 389
              |.|....|:| .:..|||.:::..::..||||.|     .::.|:|..::||         .|
Yeast   535 --NIKIWKTFVD-TFNTLPLAAIVTGKIFCVHGGLS-----PVLNSMDEIRHVS---------RP 582

  Fly   390 LDKTEWQQIFDIMWSDPQATMGCVPNTLRGAGVWFGPDVTDNFLQRHRLSYVIRSHECKPNGHEF 454
            .|..::..|.|::||||..:.....:..||....:.....:.||.:.....|.|:|....:|:||
Yeast   583 TDVPDFGLINDLLWSDPTDSSNEWEDNERGVSFCYNKVAINKFLNKFGFDLVCRAHMVVEDGYEF 647

  Fly   455 MHDNKIITIFSASNYYAIGSNKGAYIRLNNQLMPHFVQYISAASQTKRLSFKQRMGIVESSALKE 519
            .:|..::|:|||.||.....|.||.:.::..|:..|                :.:..::|:|||:
Yeast   648 FNDRSLVTVFSAPNYCGEFDNWGAVMTVSEGLLCSF----------------ELLDPLDSTALKQ 696

  Fly   520 LAVRMRDHR 528
            :..:.|..|
Yeast   697 VMKKGRQER 705

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdgCNP_536738.3 IQ 89..111 CDD:197470 4/22 (18%)
MPP_RdgC 184..494 CDD:277364 98/314 (31%)
EFh 616..681 CDD:238008
PPZ2NP_010724.1 MPP_PP1_PPKL 397..688 CDD:277359 96/326 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000018
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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